RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 TCP10L2B9ZVM9 353 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 H0YHG0 523 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 FAM107AO95990 144 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 MMP10P09238 476 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 USP8P40818 1118 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 DR1Q01658 176 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 PDE1CQ14123 709 aaPredicted RBP12.55□□□□□ -0.4
SYNE2-207ENST00000458046 CEP55Q53EZ4 464 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 C6orf118Q5T5N4 469 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 COL23A1Q86Y22 540 aaPredicted RBP12.55□□□□□ -0.4
SYNE2-207ENST00000458046 LXNQ9BS40 222 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 FAM114A2Q9NRY5 505 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 PIH1D1Q9NWS0 290 aaKnown RBP12.55□□□□□ -0.4
SYNE2-207ENST00000458046 SNX24Q9Y343 169 aa12.55□□□□□ -0.4
SYNE2-207ENST00000458046 UBR3Q6ZT12 1888 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 ARHGEF35A5YM69 484 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 GMNCA6NCL1 334 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 TMEM127O75204 238 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 SKIP12755 728 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 KRT13P13646 458 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 PLTPP55058 493 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 BFSP1Q12934 665 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 TRPM4Q8TD43 1214 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 ATP8B4Q8TF62 1192 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 FMO2Q99518 471 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 AGPAT1Q99943 283 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 MRIQ9BWK5 157 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.54□□□□□ -0.4
SYNE2-207ENST00000458046 CTTNBP2NLQ9P2B4 639 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 SLC12A6Q9UHW9 1150 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 ALG6Q9Y672 507 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 NCANO14594 1321 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 LINC00854A0A1B0GVQ3 168 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 FTLP02792 175 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-207ENST00000458046 GUCY2CP25092 1073 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 HNRNPH1P31943 449 aaKnown RBP12.54□□□□□ -0.4
SYNE2-207ENST00000458046 SOX11P35716 441 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 PLA2G5P39877 138 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 GCLMP48507 274 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 PTENP60484 403 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 PPP2R2AP63151 447 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 NR1H3Q13133 447 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 MICALCLQ6ZW33 695 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 STXBP4Q6ZWJ1 553 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 ARHGEF19Q8IW93 802 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 DAW1Q8N136 415 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 ZSWIM2Q8NEG5 633 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 MDM1Q8TC05 714 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 SEC14L1Q92503 715 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 KRT35Q92764 455 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 CYFIP2Q96F07 1278 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 RBCK1Q9BYM8 510 aa12.54□□□□□ -0.4
SYNE2-207ENST00000458046 EMSYQ7Z589 1322 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 J3KRW8 73 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 TIPRLO75663 272 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 SHBGP04278 402 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 TYRP1P17643 537 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 MARCKSL1P49006 195 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 NFIL3Q16649 462 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 AOC3Q16853 763 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 CHADLQ6NUI6 762 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 SPOCD1Q6ZMY3 1216 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 LMO3Q8TAP4 145 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 PXYLP1Q8TE99 480 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 BHMTQ93088 406 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 ERP44Q9BS26 406 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 SARGQ9BW04 601 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 ACP6Q9NPH0 428 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 FANCFQ9NPI8 374 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 ZBTB21Q9ULJ3 1066 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 TTC7AQ9ULT0 858 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-207ENST00000458046 FRMPD4Q14CM0 1322 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 LRRC37AA6NMS7 1700 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 CLRN2A0PK11 232 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 SMIM23A6NLE4 172 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 K7ENM7 598 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 GTF2A1P52655 376 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-207ENST00000458046 PURAQ00577 322 aaKnown RBP12.53□□□□□ -0.4
SYNE2-207ENST00000458046 NFKB2Q00653 900 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 PPP3CAQ08209 521 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 SF3A3Q12874 501 aaKnown RBP eCLIP12.53□□□□□ -0.4
SYNE2-207ENST00000458046 GALEQ14376 348 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 ATP13A4Q4VNC1 1196 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 NUGGCQ68CJ6 796 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 KCNV1Q6PIU1 500 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 VPS52Q8N1B4 723 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 NAT8LQ8N9F0 302 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 RAPGEF5Q92565 580 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 KAT5Q92993 513 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 C18orf8Q96DM3 657 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 RAB17Q9H0T7 212 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 CARD9Q9H257 536 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 FBXO28Q9NVF7 368 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 GIMAP2Q9UG22 337 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 PNMA8BQ9ULN7 279 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-207ENST00000458046 TRPC6Q9Y210 931 aa12.53□□□□□ -0.4
SYNE2-207ENST00000458046 SIPA1L1O43166 1804 aa12.52□□□□□ -0.4
SYNE2-207ENST00000458046 GOLGA6L10A0A0M3HER8 536 aa12.52□□□□□ -0.41
SYNE2-207ENST00000458046 RAD52P43351 418 aa12.52□□□□□ -0.41
SYNE2-207ENST00000458046 FNTAP49354 379 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms