RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 CBFA2T3O75081 653 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 ALDH2P05091 517 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 UQCRBP14927 111 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 COPB2P35606 906 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 JAM2P57087 298 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 SHROOM1Q2M3G4 852 aaPredicted RBP20.29■□□□□ 0.84
HMGA1-205ENST00000447654 C11orf63Q6NUN7 778 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 TTC27Q6P3X3 843 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 BORAQ6PGQ7 559 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 PDSS2Q86YH6 399 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 SCYL3Q8IZE3 742 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 C17orf75Q9HAS0 396 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 BLOC1S4Q9NUP1 217 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 CLIC5Q9NZA1 410 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 ANKFY1Q9P2R3 1169 aa20.29■□□□□ 0.84
HMGA1-205ENST00000447654 ZNF219Q9P2Y4 722 aaPredicted RBP20.29■□□□□ 0.84
HMGA1-205ENST00000447654 R3HDM2Q9Y2K5 976 aaKnown RBP20.29■□□□□ 0.84
HMGA1-205ENST00000447654 SCN9AQ15858 1988 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 RASA4BC9J798 803 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 E9PBE3 544 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 RASA4O43374 803 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 ABHD2P08910 425 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 GRIA2P42262 883 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 CACNB3P54284 484 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 SH3D19Q5HYK7 790 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 GRAMD4Q6IC98 578 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 SATL1Q86VE3 508 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 BBS5Q8N3I7 341 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.28■□□□□ 0.84
HMGA1-205ENST00000447654 MAML1Q92585 1016 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 ZFRQ96KR1 1074 aaKnown RBP20.28■□□□□ 0.84
HMGA1-205ENST00000447654 DMTF1Q9Y222 760 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.28■□□□□ 0.84
HMGA1-205ENST00000447654 IGKV6D-41A0A0C4DH26 115 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 CCDC162PA2VCL2 907 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 TRIM43BA6NCK2 446 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 RARBP10826 455 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 HARSP12081 509 aaKnown RBP20.28■□□□□ 0.84
HMGA1-205ENST00000447654 SHMT1P34896 483 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 KCNH2Q12809 1159 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 PPP2R5CQ13362 524 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 SEL1L2Q5TEA6 688 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 CCDC62Q6P9F0 684 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 TDRPQ86YL5 185 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 CCDC105Q8IYK2 499 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 CYP4X1Q8N118 509 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 OR6Y1Q8NGX8 325 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 U2AF1L4Q8WU68 220 aaKnown RBP20.28■□□□□ 0.84
HMGA1-205ENST00000447654 OSBPL8Q9BZF1 889 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 TSPYL2Q9H2G4 693 aaPredicted RBP20.28■□□□□ 0.84
HMGA1-205ENST00000447654 INIPQ9NRY2 104 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 TAS2R1Q9NYW7 299 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 TMOD4Q9NZQ9 345 aa20.28■□□□□ 0.84
HMGA1-205ENST00000447654 THAP12O43422 761 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 CIB2O75838 187 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 CHN2P52757 468 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 NAPAP54920 295 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 EDRF1Q3B7T1 1238 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 TCERG1LQ5VWI1 586 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 Q6ZNX1 250 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 RHOT2Q8IXI1 618 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 KCNN1Q92952 543 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 ITPKCQ96DU7 683 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 USP29Q9HBJ7 922 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 SUGT1Q9Y2Z0 365 aa20.27■□□□□ 0.84
HMGA1-205ENST00000447654 HTR3EA5X5Y0 456 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 SMCO2A6NFE2 343 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 CHRNA5P30532 468 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 PGM1P36871 562 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 ACTR3P61158 418 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 EXOC3L4Q17RC7 722 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 OTOAQ7RTW8 1153 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 ADAT2Q7Z6V5 191 aaKnown RBP20.27■□□□□ 0.83
HMGA1-205ENST00000447654 TRABD2AQ86V40 505 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 ALG3Q92685 438 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 HNRNPABQ99729 332 aaKnown RBP20.27■□□□□ 0.83
HMGA1-205ENST00000447654 LRRC19Q9H756 370 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 SSU72Q9NP77 194 aaKnown RBP20.27■□□□□ 0.83
HMGA1-205ENST00000447654 SLCO1B3Q9NPD5 702 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 ARL8BQ9NVJ2 186 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 UTP6Q9NYH9 597 aaKnown RBP20.27■□□□□ 0.83
HMGA1-205ENST00000447654 ZNHIT2Q9UHR6 403 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 TELO2Q9Y4R8 837 aa20.27■□□□□ 0.83
HMGA1-205ENST00000447654 PLIN4Q96Q06 1357 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 SLX4Q8IY92 1834 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 TMEM110-MUSTN1A8MSY1 372 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 BUD23O43709 281 aaKnown RBP20.26■□□□□ 0.83
HMGA1-205ENST00000447654 MAN1A1P33908 653 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 GRB10Q13322 594 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 TMEM266Q2M3C6 531 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 TMEM63BQ5T3F8 832 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 FRMD5Q7Z6J6 570 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 TMEM110Q86TL2 294 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 SYT2Q8N9I0 419 aaPredicted RBP20.26■□□□□ 0.83
HMGA1-205ENST00000447654 CCDC110Q8TBZ0 833 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 BTBD9Q96Q07 612 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 DNAJC18Q9H819 358 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 PPCSQ9HAB8 311 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 SERPINB13Q9UIV8 391 aa20.26■□□□□ 0.83
HMGA1-205ENST00000447654 MTO1Q9Y2Z2 717 aaKnown RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms