RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 UNGP13051 313 aaPredicted RBP22.57■■□□□ 1.2
PTPRF-207ENST00000436724 POLR2BP30876 1174 aaKnown RBP22.57■■□□□ 1.2
PTPRF-207ENST00000436724 POU5F1Q01860 360 aaKnown RBP22.57■■□□□ 1.2
PTPRF-207ENST00000436724 C2CD6Q53TS8 623 aa22.57■■□□□ 1.2
PTPRF-207ENST00000436724 SLFN11Q7Z7L1 901 aa22.57■■□□□ 1.2
PTPRF-207ENST00000436724 CYFIP2Q96F07 1278 aa22.57■■□□□ 1.2
PTPRF-207ENST00000436724 KIF12Q96FN5 646 aa22.57■■□□□ 1.2
PTPRF-207ENST00000436724 ZMAT2Q96NC0 199 aaKnown RBP22.57■■□□□ 1.2
PTPRF-207ENST00000436724 TRIM6Q9C030 488 aaPredicted RBP22.57■■□□□ 1.2
PTPRF-207ENST00000436724 AKAP5P24588 427 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 ZNF132P52740 706 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 CDH8P55286 799 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 ACAD10Q6JQN1 1059 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 TAF2Q6P1X5 1199 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 NME8Q8N427 588 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 THAP12O43422 761 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 CTSHP09668 335 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 GLRA4Q5JXX5 417 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 NAA35Q5VZE5 725 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 PEX26Q7Z412 305 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 ZNF677Q86XU0 584 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 CFHR5Q9BXR6 569 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 CELF4Q9BZC1 486 aaKnown RBP22.56■■□□□ 1.2
PTPRF-207ENST00000436724 DPP3Q9NY33 737 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 TSKSQ9UJT2 592 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 AGAP1Q9UPQ3 857 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 C2CD2Q9Y426 696 aa22.56■■□□□ 1.2
PTPRF-207ENST00000436724 NKX3-2P78367 333 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 PCBP1Q15365 356 aaKnown RBP eCLIP22.55■■□□□ 1.24e-7■□□□□ 9
PTPRF-207ENST00000436724 ZNF667Q5HYK9 610 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 NT5DC3Q86UY8 548 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 RHOT2Q8IXI1 618 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 KLHDC9Q8NEP7 349 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 ZNF653Q96CK0 615 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 UBXN6Q9BZV1 441 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 ANKZF1Q9H8Y5 726 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 NOC2LQ9Y3T9 749 aaKnown RBP22.55■■□□□ 1.2
PTPRF-207ENST00000436724 GRIN2DO15399 1336 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 KIF4AO95239 1232 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 HMGCRP04035 888 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 RPS6KA1Q15418 735 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 CCSAPQ6IQ19 270 aaPredicted RBP22.55■■□□□ 1.2
PTPRF-207ENST00000436724 PHLDB2Q86SQ0 1253 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 ZNF784Q8NCA9 323 aaPredicted RBP22.55■■□□□ 1.2
PTPRF-207ENST00000436724 ZNF606Q8WXB4 792 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 SNX27Q96L92 541 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 ZSWIM1Q9BR11 485 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 SDCBP2Q9H190 292 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 RNF216Q9NWF9 866 aaPredicted RBP22.55■■□□□ 1.2
PTPRF-207ENST00000436724 CDY2AQ9Y6F7 541 aa22.55■■□□□ 1.2
PTPRF-207ENST00000436724 RECQL4O94761 1208 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 CKAP4Q07065 602 aaKnown RBP22.54■■□□□ 1.2
PTPRF-207ENST00000436724 UBXN11Q5T124 520 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 FAM228AQ86W67 206 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 RAET1EQ8TD07 263 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 RNF39Q9H2S5 420 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 SMYD3Q9H7B4 428 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 STXBP5LQ9Y2K9 1186 aa22.54■■□□□ 1.2
PTPRF-207ENST00000436724 KCNK3O14649 394 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 CYP1A1P04798 512 aaPredicted RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 RHOXF2BP0C7M4 288 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 BRD2P25440 801 aaKnown RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 MRPS6P82932 125 aaKnown RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 C2orf54Q08AI8 447 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 ORC1Q13415 861 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 MAP3K21Q5TCX8 1036 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 LLGL2Q6P1M3 1020 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 ZNF771Q7L3S4 317 aaPredicted RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 TAF4BQ92750 862 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 HPDLQ96IR7 371 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 RHOXF2Q9BQY4 288 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 ARFGAP3Q9NP61 516 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 KLK14Q9P0G3 267 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 THSD7BQ9C0I4 1608 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 HOXD10P28358 340 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 AXLP30530 894 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 RNASE9P60153 205 aaKnown RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 APBB1IPQ7Z5R6 666 aaPredicted RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 SYCE1Q8N0S2 351 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 C18orf25Q96B23 403 aaPredicted RBP22.53■■□□□ 1.2
PTPRF-207ENST00000436724 BTBD6Q96KE9 485 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 NUP85Q9BW27 656 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 BCO2Q9BYV7 579 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 ABCB6Q9NP58 842 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 TUBGCP4Q9UGJ1 667 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 GTF3C4Q9UKN8 822 aa22.53■■□□□ 1.2
PTPRF-207ENST00000436724 YARSP54577 528 aaKnown RBP22.52■■□□□ 1.2
PTPRF-207ENST00000436724 CCDC181Q5TID7 509 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 SERINC5Q86VE9 423 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 TFAP2BQ92481 460 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 PKNOX2Q96KN3 472 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 FUT8Q9BYC5 575 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 CNOT8Q9UFF9 292 aaKnown RBP22.52■■□□□ 1.2
PTPRF-207ENST00000436724 HMGXB4Q9UGU5 601 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 ITGA11Q9UKX5 1188 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 TMEM110-MUSTN1A8MSY1 372 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 PPEF2O14830 753 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 CHRNA1P02708 482 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 CYP1A2P05177 515 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 MAP2K2P36507 400 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms