RNA–Protein interactions for RNA: ENST00000433271.6

TMEM248-205, Transcript of transmembrane protein 248, humanhuman

TSL 1 (best)

Gene TMEM248, Length 1,610 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-205ENST00000433271 DSC1Q08554 894 aa28.4■■■□□ 2.14
TMEM248-205ENST00000433271 UPP1Q16831 310 aa28.4■■■□□ 2.14
TMEM248-205ENST00000433271 TMEM240Q5SV17 173 aa28.4■■■□□ 2.14
TMEM248-205ENST00000433271 MRPL9Q9BYD2 267 aaKnown RBP28.4■■■□□ 2.14
TMEM248-205ENST00000433271 GPR88Q9GZN0 384 aa28.4■■■□□ 2.14
TMEM248-205ENST00000433271 CASTOR2A6NHX0 329 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 PODXLO00592 558 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 DGKIO75912 1065 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 STAT1P42224 750 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 KCNJ6P48051 423 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 TAF6P49848 677 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 GATMP50440 423 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 DEFB103AP81534 67 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 SFMBT2Q5VUG0 894 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 FMNL3Q8IVF7 1028 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 SHC3Q92529 594 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 ARID3AQ99856 593 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 AIPL1Q9NZN9 384 aa28.39■■■□□ 2.13
TMEM248-205ENST00000433271 SCN1AP35498 2009 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 FOXN3O00409 490 aaPredicted RBP28.38■■■□□ 2.13
TMEM248-205ENST00000433271 DDHD2O94830 711 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 ASPAP45381 313 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 LILRA4P59901 499 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 SV2CQ496J9 727 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 ZNF280BQ86YH2 543 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 BCO2Q9BYV7 579 aa28.38■■■□□ 2.13
TMEM248-205ENST00000433271 ZNHIT6Q9NWK9 470 aaKnown RBP28.38■■■□□ 2.13
TMEM248-205ENST00000433271 TBKBP1A7MCY6 615 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 SOX5P35711 763 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 TNNC1P63316 161 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 SMYD5Q6GMV2 418 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 COLGALT2Q8IYK4 626 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 FAM193BQ96PV7 902 aaPredicted RBP28.37■■■□□ 2.13
TMEM248-205ENST00000433271 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.37■■■□□ 2.134e-7■■□□□ 13.4
TMEM248-205ENST00000433271 GDAP2Q9NXN4 497 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 CACNG4Q9UBN1 327 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 POLIQ9UNA4 740 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 NR2E3Q9Y5X4 410 aa28.37■■■□□ 2.13
TMEM248-205ENST00000433271 KPNA7A9QM74 516 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 PAAF1Q9BRP4 392 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 CYP3A43Q9HB55 503 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 SPTLC1O15269 473 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 FECHP22830 423 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 MEA1Q16626 185 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 E4F1Q66K89 784 aaPredicted RBP28.36■■■□□ 2.13
TMEM248-205ENST00000433271 WDR59Q6PJI9 974 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 FAM71AQ8IYT1 594 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 FAM124BQ9H5Z6 455 aaPredicted RBP28.36■■■□□ 2.13
TMEM248-205ENST00000433271 SNX9Q9Y5X1 595 aa28.36■■■□□ 2.13
TMEM248-205ENST00000433271 ZBBXA8MT70 800 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 B4GALT3O60512 393 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 ACO1P21399 889 aaKnown RBP28.35■■■□□ 2.13
TMEM248-205ENST00000433271 PAX3P23760 479 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 DCLRE1AQ6PJP8 1040 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 LRRC43Q8N309 656 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 CCDC112Q8NEF3 446 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 HERVK_113Q902F9 699 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 MMS19Q96T76 1030 aa28.35■■■□□ 2.13
TMEM248-205ENST00000433271 BAG1Q99933 345 aaPredicted RBP28.35■■■□□ 2.13
TMEM248-205ENST00000433271 B3GAT3O94766 335 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 WEE2P0C1S8 567 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 PNMA6AP0CW24 399 aaPredicted RBP28.34■■■□□ 2.13
TMEM248-205ENST00000433271 YWHAEP62258 255 aaKnown RBP28.34■■■□□ 2.13
TMEM248-205ENST00000433271 CDK17Q00537 523 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 SCARA5Q6ZMJ2 495 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 IRF2BP2Q7Z5L9 587 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 UBR7Q8N806 425 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 RABGGTAQ92696 567 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 ZNF689Q96CS4 500 aaPredicted RBP28.34■■■□□ 2.13
TMEM248-205ENST00000433271 NRDE2Q9H7Z3 1164 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 CNTN6Q9UQ52 1028 aa28.34■■■□□ 2.13
TMEM248-205ENST00000433271 FNDC1Q4ZHG4 1894 aaPredicted RBP28.34■■■□□ 2.13
TMEM248-205ENST00000433271 GFPT2O94808 682 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 CCDC172P0C7W6 258 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 FERP16591 822 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 ASIC2Q16515 512 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 HS1BP3Q53T59 392 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 C3orf58Q8NDZ4 430 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 SMYD3Q9H7B4 428 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 CISHQ9NSE2 258 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 DNAJB4Q9UDY4 337 aa28.33■■■□□ 2.13
TMEM248-205ENST00000433271 USP8P40818 1118 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 AARSP49588 968 aaKnown RBP eCLIP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 ARID5AQ03989 594 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 TMCO2Q7Z6W1 182 aaPredicted RBP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 TMEM139Q8IV31 216 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 TRIM44Q96DX7 344 aaPredicted RBP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 ZNF830Q96NB3 372 aaPredicted RBP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 CXXC1Q9P0U4 656 aaPredicted RBP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 NRDCO43847 1150 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 KRT5P13647 590 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 IGFBP6P24592 240 aaPredicted RBP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 PAN2Q504Q3 1202 aaKnown RBP28.32■■■□□ 2.12
TMEM248-205ENST00000433271 FAM117BQ6P1L5 589 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 LIMS2Q7Z4I7 341 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 TMTC1Q8IUR5 882 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 TTC39CQ8N584 583 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 TMEM175Q9BSA9 504 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 SDCBP2Q9H190 292 aa28.32■■■□□ 2.12
TMEM248-205ENST00000433271 KCNF1Q9H3M0 494 aa28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms