RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 XYLT2Q9H1B5 865 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 HSD3B7Q9H2F3 369 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 TLR9Q9NR96 1032 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 ANO10Q9NW15 660 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 PUF60Q9UHX1 559 aaKnown RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 SF3B1O75533 1304 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP40-205ENST00000430158 EYSQ5T1H1 3165 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 C2orf71A6NGG8 1288 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 HIDE1A8MVS5 230 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 TBC1D4O60343 1298 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 ITGB3P05106 788 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 EPB41P11171 864 aaKnown RBP13.4□□□□□ -0.26
USP40-205ENST00000430158 TNNI1P19237 187 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 POLR2BP30876 1174 aaKnown RBP13.4□□□□□ -0.26
USP40-205ENST00000430158 GTF2H1P32780 548 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 AP3M2P53677 418 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 RBP5P82980 135 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 NCAPHQ15003 741 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 PTPN14Q15678 1187 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 STX1AQ16623 288 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 PDE12Q6L8Q7 609 aaKnown RBP13.4□□□□□ -0.26
USP40-205ENST00000430158 SASS6Q6UVJ0 657 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 ADGRD2Q7Z7M1 963 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 TRIM59Q8IWR1 403 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 LRRC52Q8N7C0 313 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 ENOX1Q8TC92 643 aaKnown RBP13.4□□□□□ -0.26
USP40-205ENST00000430158 AUTS2Q8WXX7 1259 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 ANKRD36BP1Q96IX9 119 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 FNBP1Q96RU3 617 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 RXFP1Q9HBX9 757 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 STK39Q9UEW8 545 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 AGAP1Q9UPQ3 857 aa13.4□□□□□ -0.26
USP40-205ENST00000430158 SPTBN5Q9NRC6 3674 aaKnown RBP13.4□□□□□ -0.27
USP40-205ENST00000430158 SYCE3A1L190 88 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 PMM2O15305 246 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 LRRN2O75325 713 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 LETM1O95202 739 aaPredicted RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 STAU1O95793 577 aaKnown RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 TNNC2P02585 160 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 TMEM191BP0C7N4 346 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 PAX3P23760 479 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 TKTP29401 623 aaKnown RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 GCLMP48507 274 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 ELAVL2Q12926 359 aaKnown RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 KCNC3Q14003 757 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 PTPROQ16827 1216 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 USP41Q3LFD5 358 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 ZSCAN23Q3MJ62 389 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 FAM171A1Q5VUB5 890 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 LNX1Q8TBB1 728 aaPredicted RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 PIK3R5Q8WYR1 880 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 SENP8Q96LD8 212 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 TCF25Q9BQ70 676 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 TTPALQ9BTX7 342 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 DNAJC25Q9H1X3 360 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 VRTNQ9H8Y1 702 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 METTL14Q9HCE5 456 aaKnown RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 NGRNQ9NPE2 291 aaKnown RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 GDAP2Q9NXN4 497 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 ARMCX3Q9UH62 379 aaPredicted RBP13.39□□□□□ -0.27
USP40-205ENST00000430158 DACH1Q9UI36 760 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 DOCK6Q96HP0 2047 aa13.39□□□□□ -0.27
USP40-205ENST00000430158 PLXNA3P51805 1871 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 NCOR1O75376 2440 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 SYN3O14994 580 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 OAZ2O95190 189 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 CXCL14O95715 111 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 CYP11A1P05108 521 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 KRT13P13646 458 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 TYMPP19971 482 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 GLUD2P49448 558 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 TAF6P49848 677 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 VASPP50552 380 aaPredicted RBP13.38□□□□□ -0.27
USP40-205ENST00000430158 MYL6P60660 151 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 CDKAL1Q5VV42 579 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 RSPO2Q6UXX9 243 aaPredicted RBP13.38□□□□□ -0.27
USP40-205ENST00000430158 TMC7Q7Z402 723 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 SEMA4DQ92854 862 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 GAS2L1Q99501 681 aaPredicted RBP13.38□□□□□ -0.27
USP40-205ENST00000430158 THAP9Q9H5L6 903 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 TMEM8AQ9HCN3 771 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 SAMSN1Q9NSI8 373 aaKnown RBP13.38□□□□□ -0.27
USP40-205ENST00000430158 COQ4Q9Y3A0 265 aa13.38□□□□□ -0.27
USP40-205ENST00000430158 KPNA7A9QM74 516 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 ADAM12O43184 909 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 TRAPPC3O43617 180 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CLASP2O75122 1294 aaKnown RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 GNA14O95837 355 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CNPP09543 421 aaKnown RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 FOSL2P15408 326 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 ZNF18P17022 549 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 IGFBP4P22692 258 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 GTF2F1P35269 517 aaKnown RBP eCLIP13.37□□□□□ -0.27
USP40-205ENST00000430158 PNPLA4P41247 253 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 HYAL1Q12794 435 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 SMC1AQ14683 1233 aaKnown RBP13.37□□□□□ -0.27
USP40-205ENST00000430158 IQCB1Q15051 598 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 ANO6Q4KMQ2 910 aa13.37□□□□□ -0.27
USP40-205ENST00000430158 CBWD6Q4V339 395 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms