RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 SPAG1Q07617 926 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 AASDHQ4L235 1098 aaPredicted RBP9.47□□□□□ -0.89
HDAC1-202ENST00000428704 APTXQ7Z2E3 356 aaKnown RBP9.47□□□□□ -0.89
HDAC1-202ENST00000428704 FILIP1Q7Z7B0 1213 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 KSR1Q8IVT5 923 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 CCDC112Q8NEF3 446 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 CEP170P1Q96L14 293 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 NAP1L5Q96NT1 182 aaPredicted RBP9.47□□□□□ -0.89
HDAC1-202ENST00000428704 SPSB2Q99619 263 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 C7orf25Q9BPX7 421 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 FDXACB1Q9BRP7 624 aaPredicted RBP9.47□□□□□ -0.89
HDAC1-202ENST00000428704 EMILIN2Q9BXX0 1053 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 OSBPL6Q9BZF3 934 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 RAB34Q9BZG1 259 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 ZSWIM4Q9H7M6 989 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 WDR6Q9NNW5 1121 aaKnown RBP9.47□□□□□ -0.89
HDAC1-202ENST00000428704 RNF19AQ9NV58 838 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 STK17AQ9UEE5 414 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 MTF2Q9Y483 593 aaPredicted RBP9.47□□□□□ -0.89
HDAC1-202ENST00000428704 IRAK3Q9Y616 596 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 NUMBLQ9Y6R0 609 aa9.47□□□□□ -0.89
HDAC1-202ENST00000428704 KLRC4O43908 158 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 DKC1O60832 514 aaKnown RBP eCLIP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 MED24O75448 989 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 ADH1BP00325 375 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 CDK11BP21127 795 aaKnown RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 SFPQP23246 707 aaKnown RBP eCLIP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 RFC5P40937 340 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 CLCN4P51793 760 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 POLGP54098 1239 aaPredicted RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 NRLP54845 237 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 BCAR1P56945 870 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 GPC5P78333 572 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 FAM189BP81408 668 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 PRKCQQ04759 706 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 EMC2Q15006 297 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 KARSQ15046 597 aaKnown RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 MLF2Q15773 248 aaPredicted RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 TUSC1Q2TAM9 212 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 ZBTB41Q5SVQ8 909 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 ARMCX5Q6P1M9 558 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 FOXR2Q6PJQ5 311 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 RNF19BQ6ZMZ0 732 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 TMC6Q7Z403 805 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 ZNF410Q86VK4 478 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 RHPN2Q8IUC4 686 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 TPH2Q8IWU9 490 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 KCTD17Q8N5Z5 321 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 RNF169Q8NCN4 708 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 ST13P5Q8NFI4 369 aaPredicted RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 MMTAG2Q9BU76 263 aaKnown RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 LRRC27Q9C0I9 530 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 IFT122Q9HBG6 1241 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 LTB4R2Q9NPC1 389 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 PRMT8Q9NR22 394 aaPredicted RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 SUCLA2Q9P2R7 463 aaPredicted RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 LIMA1Q9UHB6 759 aaKnown RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 R3HCC1Q9Y3T6 440 aaKnown RBP9.46□□□□□ -0.9
HDAC1-202ENST00000428704 PPME1Q9Y570 386 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 DENND4AQ7Z401 1863 aa9.46□□□□□ -0.9
HDAC1-202ENST00000428704 CNOT1A5YKK6 2376 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CCDC195A0A1B0GUA6 201 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 PVALEFA0A1B0GWK0 134 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 ANHXE9PGG2 379 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 KIF2AO00139 706 aaPredicted RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 NCAM2O15394 837 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CCP110O43303 1012 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 LAMP2P13473 410 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CD72P21854 359 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 PBX1P40424 430 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 RARRES1P49788 294 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 HTR4Q13639 388 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 ARID5BQ14865 1188 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 SLC44A4Q53GD3 710 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 XKR9Q5GH70 373 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 HYIQ5T013 277 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 SPECC1LQ69YQ0 1117 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 ELMSAN1Q6PJG2 1045 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 GET4Q7L5D6 327 aaPredicted RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 ZNF598Q86UK7 904 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CATSPER3Q86XQ3 398 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CMASQ8NFW8 434 aaPredicted RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 PIGOQ8TEQ8 1089 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 NOC3LQ8WTT2 800 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 PRPF31Q8WWY3 499 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 SLC7A3Q8WY07 619 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 ZCCHC14Q8WYQ9 949 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CCDC47Q96A33 483 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 TMEM143Q96AN5 459 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 CALML4Q96GE6 196 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 DHTKD1Q96HY7 919 aaPredicted RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 NLRP4Q96MN2 994 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 SCLT1Q96NL6 688 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 JPH2Q9BR39 696 aaPredicted RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 DDX23Q9BUQ8 820 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 TRIM9Q9C026 710 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 MINDY3Q9H8M7 445 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 SAMSN1Q9NSI8 373 aaKnown RBP9.45□□□□□ -0.9
HDAC1-202ENST00000428704 ANKEF1Q9NU02 776 aa9.45□□□□□ -0.9
HDAC1-202ENST00000428704 INTS13Q9NVM9 706 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms