RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 TMEM143Q96AN5 459 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 HVCN1Q96D96 273 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 FNBP1Q96RU3 617 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 ARHGAP39Q9C0H5 1083 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 ATP6V0A4Q9HBG4 840 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 XPNPEP1Q9NQW7 623 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 COQ4Q9Y3A0 265 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 RGS16O15492 202 aaPredicted RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 TRAPPC3O43617 180 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 DGAT1O75907 488 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 SNAI1O95863 264 aaPredicted RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 HARSP12081 509 aaKnown RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 ATP4AP20648 1035 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 RRM1P23921 792 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 GJC1P36383 396 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 STAT5BP51692 787 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 CDR1P51861 262 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 INHBEP58166 350 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 QPCTQ16769 361 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 DEFB115Q30KQ5 88 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 SGO2Q562F6 1265 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 CELF3Q5SZQ8 465 aaKnown RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 FBXW10Q5XX13 1052 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 C17orf99Q6UX52 265 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 MCPH1Q8NEM0 835 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 EPS8L3Q8TE67 593 aaKnown RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 TINF2Q9BSI4 451 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 MAF1Q9H063 256 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 CYP26B1Q9NR63 512 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 DNAJC17Q9NVM6 304 aaKnown RBP11.37□□□□□ -0.59
CUX1-205ENST00000425244 ASIC3Q9UHC3 531 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 WDR81Q562E7 1941 aa11.37□□□□□ -0.59
CUX1-205ENST00000425244 SCP2P22307 547 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 PIK3CAP42336 1068 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 SSR1P43307 286 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 VPS41P49754 854 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 POLGP54098 1239 aaPredicted RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 DRG2P55039 364 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 IFI35P80217 286 aaPredicted RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 CALCOCO2Q13137 446 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 WDR44Q5JSH3 913 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 GPATCH11Q8N954 259 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 ZNF784Q8NCA9 323 aaPredicted RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 PPP1R13LQ8WUF5 828 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 SEPT1Q8WYJ6 367 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 ZNF516Q92618 1163 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 LENG1Q96BZ8 264 aaPredicted RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 FBXL18Q96ME1 805 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 ANKFY1Q9P2R3 1169 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 PARP2Q9UGN5 583 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 LRRIQ4A6NIV6 560 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 NUDT17P0C025 328 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 GTF2H1P32780 548 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 NSFP46459 744 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 WNT7BP56706 349 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 NLRP11P59045 1033 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 BRDTQ58F21 947 aaPredicted RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 TAS1R3Q7RTX0 852 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 CPLX4Q7Z7G2 160 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 SPATS2Q86XZ4 545 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 CCDC50Q8IVM0 306 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 RDM1Q8NG50 284 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 KAT2BQ92831 832 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 ZBTB10Q96DT7 871 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 CAPNS2Q96L46 248 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 CCDC114Q96M63 670 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 PCYT2Q99447 389 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 FAM118BQ9BPY3 351 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 NTPCRQ9BSD7 190 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 DONSONQ9NYP3 566 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 FLRT1Q9NZU1 646 aa11.36□□□□□ -0.59
CUX1-205ENST00000425244 DDX20Q9UHI6 824 aaKnown RBP11.36□□□□□ -0.59
CUX1-205ENST00000425244 STBD1O95210 358 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 KRT17Q04695 432 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 STRN3Q13033 797 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 SIX1Q15475 284 aaPredicted RBP11.35□□□□□ -0.59
CUX1-205ENST00000425244 CCDC38Q502W7 563 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 TAPT1Q6NXT6 567 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 CCDC62Q6P9F0 684 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 ABRAQ8N0Z2 381 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 PSPC1Q8WXF1 523 aaKnown RBP11.35□□□□□ -0.59
CUX1-205ENST00000425244 TLCD1Q96CP7 247 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 GPR20Q99678 358 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 C11orf70Q9BRQ4 267 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 PLVAPQ9BX97 442 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 HEMGNQ9BXL5 484 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 C17orf75Q9HAS0 396 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 CHST7Q9NS84 486 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 DKC1O60832 514 aaKnown RBP eCLIP11.35□□□□□ -0.591e-7■■■■■ 34.5
CUX1-205ENST00000425244 ATP2C2O75185 946 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 ACSL3O95573 720 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 HLA-DRAP01903 254 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 OATP04181 439 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 CHN1P15882 459 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 GARTP22102 1010 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 CTGFP29279 349 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 IGBP1P78318 339 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 GCNT1Q02742 428 aa11.35□□□□□ -0.59
CUX1-205ENST00000425244 BYSLQ13895 437 aaKnown RBP11.35□□□□□ -0.59
CUX1-205ENST00000425244 EMC2Q15006 297 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms