RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 EPB41L4AQ9HCS5 686 aaPredicted RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 PDIA3P30101 505 aaKnown RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 CENPAP49450 140 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 SAMD14Q8IZD0 417 aaPredicted RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 AGPAT5Q9NUQ2 364 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 SNX13Q9Y5W8 968 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 CD300CQ08708 224 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 EFR3AQ14156 821 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 AKAP14Q86UN6 197 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 SLC38A6Q8IZM9 456 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 AKAP1Q92667 903 aaKnown RBP eCLIP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 ATP10DQ9P241 1426 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 WASLO00401 505 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 FOXN3O00409 490 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CALM1P0DP23 149 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CALM2P0DP24 149 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CALM3P0DP25 149 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 HEATR3Q7Z4Q2 680 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ELMOD2Q8IZ81 293 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 PGBD4Q96DM1 585 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ACAT2Q9BWD1 397 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TDRD1Q9BXT4 1180 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 FKBP14Q9NWM8 211 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 HESX1Q9UBX0 185 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SLC12A6Q9UHW9 1150 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 E9PBE3 544 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 MCMDC2Q4G0Z9 681 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 BBS5Q8N3I7 341 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 LSM14AQ8ND56 463 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 VPS45Q9NRW7 570 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 DAB2P98082 770 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SULT2A1Q06520 285 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 EFTUD2Q15029 972 aaKnown RBP eCLIP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ZMYND11Q15326 602 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CREG2Q8IUH2 290 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TMEM139Q8IV31 216 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SPOCK3Q9BQ16 436 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 MIR1-1HGQ9H1L0 117 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 COG4Q9H9E3 785 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 STMN3Q9NZ72 180 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ZNF652Q9Y2D9 606 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 NDUFB9Q9Y6M9 179 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 POLR2MP0CAP2 368 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 POU2F1P14859 743 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ARHGAP44Q17R89 818 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 PPP4R1Q8TF05 950 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 FAR2Q96K12 515 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 PRCPP42785 496 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 KLHL30Q0D2K2 578 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 GRM1Q13255 1194 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 LRRC71Q8N4P6 559 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 MRPS26Q9BYN8 205 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SPC25Q9HBM1 224 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 IFNA14P01570 189 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CD44P16070 742 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SERPINH1P50454 418 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 COPZ1P61923 177 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SRBD1Q8N5C6 995 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ACMSDQ8TDX5 336 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 C1orf54Q8WWF1 131 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 LIMA1Q9UHB6 759 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 INO80Q9ULG1 1556 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 GOLGA8SH3BPF8 625 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ATF2P15336 505 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 BFSP1Q12934 665 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TRPC3Q13507 836 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 PLEKHO2Q8TD55 490 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ZFPM2Q8WW38 1151 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 NUDT16Q96DE0 195 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 AIFM2Q9BRQ8 373 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 KATNA1O75449 491 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 FGGP02679 453 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ITGALP20701 1170 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 POLD2P49005 469 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 THOP1P52888 689 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 LMNB2Q03252 620 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 FCHO2Q0JRZ9 810 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 WDR72Q3MJ13 1102 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 DDX17Q92841 729 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 POU2F3Q9UKI9 436 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TK2O00142 265 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TPTEP56180 551 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 MYL10Q9BUA6 226 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CD209Q9NNX6 404 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 PIH1D3Q9NQM4 214 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ADGRB3O60242 1522 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SIN3BO75182 1162 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CASP2P42575 452 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ZAP70P43403 619 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 KRT6CP48668 564 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 NFIAQ12857 509 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 MEI1Q5TIA1 1274 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 ZNF746Q6NUN9 644 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 PSKH2Q96QS6 385 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SAV1Q9H4B6 383 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TNRQ92752 1358 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CSRNP1Q96S65 589 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 TRIT1Q9H3H1 467 aaKnown RBP3.58□□□□□ -1.84
SYNE1-212ENST00000423061 SEMA4AQ9H3S1 761 aa3.58□□□□□ -1.84
SYNE1-212ENST00000423061 CPSF1Q10570 1443 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms