RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 TRPC3Q13507 836 aa16.66■□□□□ 0.26
SHMT2-202ENST00000414700 DRAP1Q14919 205 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-202ENST00000414700 NAB2Q15742 525 aa16.66■□□□□ 0.26
SHMT2-202ENST00000414700 CLLU1OSQ5K130 101 aa16.66■□□□□ 0.26
SHMT2-202ENST00000414700 APBB2Q92870 758 aa16.66■□□□□ 0.26
SHMT2-202ENST00000414700 NT5C1BQ96P26 610 aa16.66■□□□□ 0.26
SHMT2-202ENST00000414700 AGAP1Q9UPQ3 857 aa16.66■□□□□ 0.26
SHMT2-202ENST00000414700 ARID5AQ03989 594 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.65■□□□□ 0.264e-7■□□□□ 9.3
SHMT2-202ENST00000414700 MNS1Q8NEH6 495 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 RABGGTAQ92696 567 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 IQCDQ96DY2 449 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 SPAG5Q96R06 1193 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 PANX2Q96RD6 677 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 RPS6KC1Q96S38 1066 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 CHP1Q99653 195 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 C1orf112Q9NSG2 853 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 UBQLN1Q9UMX0 589 aaKnown RBP16.65■□□□□ 0.26
SHMT2-202ENST00000414700 F8VZ95 297 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 TADA3O75528 432 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 PLEKP08567 350 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-202ENST00000414700 ACRP10323 421 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 SKIP12755 728 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 ETF1P62495 437 aaKnown RBP16.65■□□□□ 0.26
SHMT2-202ENST00000414700 ZNF699Q32M78 642 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 WDR44Q5JSH3 913 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 MFSD5Q6N075 450 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 PGBD4Q96DM1 585 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 ABHD8Q96I13 439 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 PAAF1Q9BRP4 392 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 STK33Q9BYT3 514 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 EDEM3Q9BZQ6 932 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 RSPH14Q9UHP6 348 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 ITGA11Q9UKX5 1188 aa16.65■□□□□ 0.26
SHMT2-202ENST00000414700 EFCAB8A8MWE9 144 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 FOXN3O00409 490 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-202ENST00000414700 ZC3H11AO75152 810 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHMT2-202ENST00000414700 EOMESO95936 686 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 THP07101 528 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 OAS2P29728 719 aaKnown RBP16.64■□□□□ 0.25
SHMT2-202ENST00000414700 GATMP50440 423 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 ZSCAN26Q16670 478 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 SGSM1Q2NKQ1 1148 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 C7orf61Q8IZ16 206 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 CRIPAKQ8N1N5 446 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 BEST2Q8NFU1 509 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 BAG1Q99933 345 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-202ENST00000414700 IMPG2Q9BZV3 1241 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 YY1AP1Q9H869 796 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 NXF1Q9UBU9 619 aaKnown RBP16.64■□□□□ 0.25
SHMT2-202ENST00000414700 POLIQ9UNA4 740 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 LTBP2Q14767 1821 aa16.64■□□□□ 0.25
SHMT2-202ENST00000414700 MTF1Q14872 753 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 WDR72Q3MJ13 1102 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 C9orf57Q5W0N0 161 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 CNKSR3Q6P9H4 555 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 SCARA5Q6ZMJ2 495 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 HPDLQ96IR7 371 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 ACP6Q9NPH0 428 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 TMEM161AQ9NX61 479 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 ANO9A1A5B4 782 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 SOWAHDA6NJG2 315 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 B4GALT3O60512 393 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 GFPT2O94808 682 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 SYN1P17600 705 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 GCNT1Q02742 428 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 MEA1Q16626 185 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 TMCO2Q7Z6W1 182 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-202ENST00000414700 PSD3Q9NYI0 1048 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 DNAI1Q9UI46 699 aa16.63■□□□□ 0.25
SHMT2-202ENST00000414700 FNDC1Q4ZHG4 1894 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-202ENST00000414700 CASTOR2A6NHX0 329 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 MYO1CO00159 1063 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 PIRO00625 290 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 FECHP22830 423 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 HNRNPH3P31942 346 aaKnown RBP16.62■□□□□ 0.25
SHMT2-202ENST00000414700 RFC2P35250 354 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 ASPAP45381 313 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 MFAP3P55082 362 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 RBP5P82980 135 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 CUL2Q13617 745 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 SFMBT2Q5VUG0 894 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 HGSNATQ68CP4 663 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 IRF2BP2Q7Z5L9 587 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 SHC3Q92529 594 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 ARHGAP20Q9P2F6 1191 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 PCDHB7Q9Y5E2 793 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 SPTLC1O15269 473 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 EVI5O60447 810 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 SEC31AO94979 1220 aaKnown RBP16.62■□□□□ 0.25
SHMT2-202ENST00000414700 UPP2O95045 317 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 CALCAP01258 141 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 WEE2P0C1S8 567 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 RFX1P22670 979 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 CASQ1P31415 396 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 SOX5P35711 763 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 NOP2P46087 812 aaKnown RBP16.62■□□□□ 0.25
SHMT2-202ENST00000414700 RAP1GAPP47736 663 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 CLCNKBP51801 687 aa16.62■□□□□ 0.25
SHMT2-202ENST00000414700 IKBKEQ14164 716 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms