RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TEKT1Q969V4 418 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 C11orf84Q9BUA3 381 aaPredicted RBP7.56□□□□□ -1.2
USP40-202ENST00000409945 EPB41L4BQ9H329 900 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 GBA2Q9HCG7 927 aaPredicted RBP7.56□□□□□ -1.2
USP40-202ENST00000409945 DLL4Q9NR61 685 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 PA2G4Q9UQ80 394 aaKnown RBP7.56□□□□□ -1.2
USP40-202ENST00000409945 MYPNQ86TC9 1320 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 LRRC10BA6NIK2 292 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 SURF6O75683 361 aaKnown RBP7.56□□□□□ -1.2
USP40-202ENST00000409945 FGFR2P21802 821 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 HUNKP57058 714 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 ATP8B2P98198 1209 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 GRM1Q13255 1194 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 MLC1Q15049 377 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 SUPT20HL1Q3ZLR7 823 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 CCDC158Q5M9N0 1113 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 TMEFF1Q8IYR6 380 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 MXD3Q9BW11 206 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 RNF38Q9H0F5 515 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 CDC42EP3Q9UKI2 254 aa7.56□□□□□ -1.2
USP40-202ENST00000409945 COL1A1P02452 1464 aaPredicted RBP7.55□□□□□ -1.2
USP40-202ENST00000409945 A0A1B0GUL7 405 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 NDUFS2O75306 463 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 RBM10P98175 930 aaKnown RBP7.55□□□□□ -1.2
USP40-202ENST00000409945 PPARAQ07869 468 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 MUM1Q2TAK8 710 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 TMEM240Q5SV17 173 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 ARMC9Q7Z3E5 817 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 NBPF11Q86T75 865 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 RPAP2Q8IXW5 612 aaPredicted RBP7.55□□□□□ -1.2
USP40-202ENST00000409945 TCEAL8Q8IYN2 117 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 ZBTB8AQ96BR9 441 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 TIFAQ96CG3 184 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 HSPBAP1Q96EW2 488 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 C8orf48Q96LL4 319 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 VEZTQ9HBM0 779 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 CROTQ9UKG9 612 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 JAG2Q9Y219 1238 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 NUMBLQ9Y6R0 609 aa7.55□□□□□ -1.2
USP40-202ENST00000409945 WDR33Q9C0J8 1336 aaKnown RBP7.55□□□□□ -1.2
USP40-202ENST00000409945 ADM5C9JUS6 153 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 RFPL1O75677 317 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 UQCRFS1P1P0C7P4 283 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 TAL1P17542 331 aaPredicted RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 KRT85P78386 507 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 TFCP2Q12800 502 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 SSPNQ14714 243 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 STILQ15468 1287 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 SAPCD2Q86UD0 394 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 SSH3Q8TE77 659 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 CDCA5Q96FF9 252 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 CAPNS2Q96L46 248 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 MRIQ9BWK5 157 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 PITHD1Q9GZP4 211 aaPredicted RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 TNNQ9UQP3 1299 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 PNMA6EA0A0J9YXQ4 647 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 TEX51A0A1B0GUA7 166 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 MAP4K4O95819 1239 aaPredicted RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 KRT1P04264 644 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 MAP2K2P36507 400 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 NOGQ13253 232 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 TTC39AQ5SRH9 613 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 CST9Q5W186 159 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 NXNQ6DKJ4 435 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 TIGD7Q6NT04 549 aaPredicted RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 DZIP1Q86YF9 867 aaKnown RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 ADGRG2Q8IZP9 1017 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 CERS5Q8N5B7 392 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 ZCCHC14Q8WYQ9 949 aaKnown RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 NOL10Q9BSC4 688 aaKnown RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 BTBD2Q9BX70 525 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 GPR108Q9NPR9 543 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 DDX20Q9UHI6 824 aaKnown RBP7.54□□□□□ -1.2
USP40-202ENST00000409945 MYH13Q9UKX3 1938 aa7.54□□□□□ -1.2
USP40-202ENST00000409945 PDS5AQ29RF7 1337 aaKnown RBP7.53□□□□□ -1.2
USP40-202ENST00000409945 VSTM5A8MXK1 200 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 CA12O43570 354 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 PEX10O60683 326 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 IL33O95760 270 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 TIMM10P62072 90 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 DLG4P78352 724 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 GSTO1P78417 241 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 DLX2Q07687 328 aaPredicted RBP7.53□□□□□ -1.2
USP40-202ENST00000409945 GALEQ14376 348 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 ERICH6BQ5W0A0 696 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 RGMBQ6NW40 437 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 OR5AN1Q8NGI8 311 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 DEFB129Q9H1M3 183 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 ABCF2Q9UG63 623 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 LIMCH1Q9UPQ0 1083 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 MRFAP1Q9Y605 127 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 SALL1Q9NSC2 1324 aa7.53□□□□□ -1.2
USP40-202ENST00000409945 ARAP2Q8WZ64 1704 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 CLRN2A0PK11 232 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 KNG1P01042 644 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 LDHCP07864 332 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 LPOP22079 712 aaPredicted RBP7.52□□□□□ -1.2
USP40-202ENST00000409945 EDNRBP24530 442 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 APEX1P27695 318 aaKnown RBP7.52□□□□□ -1.2
USP40-202ENST00000409945 GNALP38405 381 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms