RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MYCLP12524 364 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ADSLP30566 484 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 AP3B2Q13367 1082 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 MARK2Q7KZI7 788 aaKnown RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ULK2Q8IYT8 1036 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 AMER2Q8N7J2 671 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 GLG1Q92896 1179 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 BORCS5Q969J3 196 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 RHOBTB2Q9BYZ6 727 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 TMEM51Q9NW97 253 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 WDR35Q9P2L0 1181 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 GAS2O43903 313 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 GUCA1CO95843 209 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 NR3C1P04150 777 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC130P13994 396 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TARSP26639 723 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 GCLCP48506 637 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 NCKAP1LP55160 1127 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TOP3AQ13472 1001 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 SMYD4Q8IYR2 804 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TBC1D19Q8N5T2 526 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 UBXN6Q9BZV1 441 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 SLC13A1Q9BZW2 595 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 PLA2G4BP0C869 781 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 KCNA1Q09470 495 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 USP38Q8NB14 1042 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TRIM39Q9HCM9 518 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 VAV3Q9UKW4 847 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ESYT3A0FGR9 886 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 UBAP1LF5GYI3 381 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 RNMTO43148 476 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 RPL5P46777 297 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ANKS3Q6ZW76 656 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TAS2R42Q7RTR8 314 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 FBXO11Q86XK2 927 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 METTL5Q9NRN9 209 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 NOD1Q9Y239 953 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 APOL1O14791 398 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 KIF22Q14807 665 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 BICRALQ6AI39 1079 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 METTL23Q86XA0 190 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 GSPT2Q8IYD1 628 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 PCDHA1Q9Y5I3 950 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 IVNS1ABPQ9Y6Y0 642 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC182A6NF36 153 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 SP4Q02446 784 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 PUDPQ08623 228 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 PIGHQ14442 188 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 NEK10Q6ZWH5 1172 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 KSR1Q8IVT5 923 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 E2F7Q96AV8 911 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ZIM3Q96PE6 472 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TIPINQ9BVW5 301 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 SYTL2Q9HCH5 934 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 EXOSC4Q9NPD3 245 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 PKD2L1Q9P0L9 805 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 MYO3BQ8WXR4 1341 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 LRRIQ4A6NIV6 560 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ACADVLP49748 655 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ZC3H7BQ9UGR2 993 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 CNOT7Q9UIV1 285 aaKnown RBP13.47□□□□□ -0.25
COL6A3-206ENST00000409809 C2CD2Q9Y426 696 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 TTC26A0AVF1 554 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 MSL3P1P0C860 447 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 KLHL17Q6TDP4 642 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ARHGEF19Q8IW93 802 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 RAB42Q8N4Z0 105 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 ZWILCHQ9H900 591 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 RNPEPL1Q9HAU8 725 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 MLXIPLQ9NP71 852 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 KCND2Q9NZV8 630 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 HDAC6Q9UBN7 1215 aa13.47□□□□□ -0.25
COL6A3-206ENST00000409809 CDC42BPAQ5VT25 1732 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 IFNA14P01570 189 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 JAK3P52333 1124 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 SNRPFP62306 86 aaKnown RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 LRRC14Q15048 493 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 KCNT1Q5JUK3 1230 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ASAP3Q8TDY4 903 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ARL8AQ96BM9 186 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 MNTQ99583 582 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 NMRK1Q9NWW6 199 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 BTN3A3O00478 584 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ADCY6O43306 1168 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ECDO95905 644 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 PTK7Q13308 1070 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ATP1A4Q13733 1029 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 NAB2Q15742 525 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 AKAP14Q86UN6 197 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 XXYLT1Q8NBI6 393 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 MDM1Q8TC05 714 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 HSD17B3P37058 310 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 DDB1Q16531 1140 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 KIF2BQ8N4N8 673 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 PDPRQ8NCN5 879 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 NARS2Q96I59 477 aaKnown RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 NEU2Q9Y3R4 380 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 MAGI2Q86UL8 1455 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms