RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 ALDH7A1P49419 539 aaKnown RBP21.99■■□□□ 1.11
VSX1-203ENST00000409285 GCNT1Q02742 428 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 HABP4Q5JVS0 413 aaKnown RBP21.99■■□□□ 1.11
VSX1-203ENST00000409285 FAM109BQ6ICB4 259 aaPredicted RBP21.99■■□□□ 1.11
VSX1-203ENST00000409285 CD300LGQ6UXG3 332 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 PI4K2AQ9BTU6 479 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 COLEC11Q9BWP8 271 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 AAASQ9NRG9 546 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 MARCH5Q9NX47 278 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 FAN1Q9Y2M0 1017 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 RWDD3Q9Y3V2 267 aa21.99■■□□□ 1.11
VSX1-203ENST00000409285 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.98■■□□□ 1.11
VSX1-203ENST00000409285 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.98■■□□□ 1.11
VSX1-203ENST00000409285 KPNA7A9QM74 516 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 P4HA1P13674 534 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 CDC25BP30305 580 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 ZNF667Q5HYK9 610 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 SPECC1LQ69YQ0 1117 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 PHLDB3Q6NSJ2 640 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 KCNT2Q6UVM3 1135 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 LIMS2Q7Z4I7 341 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 JAKMIP2Q96AA8 810 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 ZNF558Q96NG5 402 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 NIF3L1Q9GZT8 377 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 APOBEC3GQ9HC16 384 aaKnown RBP21.98■■□□□ 1.11
VSX1-203ENST00000409285 ADAM28Q9UKQ2 775 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 NUB1Q9Y5A7 615 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 CDH23Q9H251 3354 aa21.98■■□□□ 1.11
VSX1-203ENST00000409285 ATG2AQ2TAZ0 1938 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 LCHNA4D1U4 455 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 SPTLC1O15269 473 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 NOL4O94818 638 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 ADCY5O95622 1261 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 EFEMP2O95967 443 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 TBXAS1P24557 533 aaPredicted RBP21.97■■□□□ 1.11
VSX1-203ENST00000409285 PPM1AP35813 382 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 WDR72Q3MJ13 1102 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 KLHDC7AQ5VTJ3 777 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 ENOSF1Q7L5Y1 443 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.97■■□□□ 1.11
VSX1-203ENST00000409285 COLGALT1Q8NBJ5 622 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 LSM14BQ9BX40 385 aaKnown RBP21.97■■□□□ 1.11
VSX1-203ENST00000409285 BCO2Q9BYV7 579 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 TTYH3Q9C0H2 523 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 GANQ9H2C0 597 aa21.97■■□□□ 1.11
VSX1-203ENST00000409285 M0QZQ0 153 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 ITGB1P05556 798 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 UCHL3P15374 230 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 ASPAP45381 313 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 KLK7P49862 253 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 LRIT3Q3SXY7 679 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 SPOPLQ6IQ16 392 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 DPH6Q7L8W6 267 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 SLC39A11Q8N1S5 342 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 NEK11Q8NG66 645 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 SUSD3Q96L08 255 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 NUP58Q9BVL2 599 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 NAA15Q9BXJ9 866 aaKnown RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 FAM207AQ9NSI2 230 aaPredicted RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 STK39Q9UEW8 545 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 PRG3Q9Y2Y8 225 aaPredicted RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 SF3B1O75533 1304 aaKnown RBP eCLIP21.96■■□□□ 1.11
VSX1-203ENST00000409285 ARHGEF37A1IGU5 675 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 LINC01553A4QN01 128 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 GRXCR1A8MXD5 290 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 TRAPPC3O43617 180 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 FAM163BP0C2L3 166 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 TRIM21P19474 475 aaKnown RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 RABGGTBP53611 331 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 TNNC1P63316 161 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 ELAVL2Q12926 359 aaKnown RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 RAB30Q15771 203 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 SPOUT1Q5T280 376 aaKnown RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 RNF168Q8IYW5 571 aaPredicted RBP21.96■■□□□ 1.11
VSX1-203ENST00000409285 TOP6BLQ8N6T0 577 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 SPATA18Q8TC71 538 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 RABGGTAQ92696 567 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 IGSF21Q96ID5 467 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 EDEM3Q9BZQ6 932 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 PCDHB12Q9Y5F1 795 aa21.96■■□□□ 1.11
VSX1-203ENST00000409285 F8W810 466 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 IGFBP6P24592 240 aaPredicted RBP21.95■■□□□ 1.1
VSX1-203ENST00000409285 CUL2Q13617 745 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 TRIM14Q14142 442 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 TIGD5Q53EQ6 642 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 TMEM173Q86WV6 379 aaPredicted RBP21.95■■□□□ 1.1
VSX1-203ENST00000409285 ARHGEF19Q8IW93 802 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 PPM1KQ8N3J5 372 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 TATDN2Q93075 761 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 PCMTD1Q96MG8 357 aaPredicted RBP21.95■■□□□ 1.1
VSX1-203ENST00000409285 SAMD11Q96NU1 681 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 PLVAPQ9BX97 442 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 PBX4Q9BYU1 374 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 CYP3A43Q9HB55 503 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 CEP72Q9P209 647 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.95■■□□□ 1.1
VSX1-203ENST00000409285 SNX9Q9Y5X1 595 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 PTPRDP23468 1912 aa21.95■■□□□ 1.1
VSX1-203ENST00000409285 COL4A4P53420 1690 aaPredicted RBP21.94■■□□□ 1.1
VSX1-203ENST00000409285 A0A1W2PQJ5 194 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms