RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TXNP10599 105 aaKnown RBP19.58■□□□□ 0.73
USP48-204ENST00000400301 SDC4P31431 198 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 MARCKSL1P49006 195 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 IRX4P78413 519 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 TRPM8Q7Z2W7 1104 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 PPM1NQ8N819 430 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 CFAP61Q8NHU2 1237 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 PLSCR1O15162 318 aa19.58■□□□□ 0.72
USP48-204ENST00000400301 BCAR1P56945 870 aa19.58■□□□□ 0.72
USP48-204ENST00000400301 CYP4A22Q5TCH4 519 aa19.58■□□□□ 0.72
USP48-204ENST00000400301 FKBP1CQ5VVH2 108 aa19.58■□□□□ 0.72
USP48-204ENST00000400301 MAP4K3Q8IVH8 894 aa19.58■□□□□ 0.72
USP48-204ENST00000400301 TRIM42Q8IWZ5 723 aa19.58■□□□□ 0.72
USP48-204ENST00000400301 RPS6KA5O75582 802 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 PROSCO94903 275 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 RPS12P25398 132 aaKnown RBP19.57■□□□□ 0.72
USP48-204ENST00000400301 MCOLN2Q8IZK6 566 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 SPIRE2Q8WWL2 714 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 SERPINB12Q96P63 405 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 TRIM55Q9BYV6 548 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 FAM129AQ9BZQ8 928 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 GOLGA8RI6L899 631 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 VWA5AO00534 786 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 COPEO14579 308 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 HNRNPH1P31943 449 aaKnown RBP19.57■□□□□ 0.72
USP48-204ENST00000400301 MKRN3Q13064 507 aaKnown RBP19.57■□□□□ 0.72
USP48-204ENST00000400301 SYCP2LQ5T4T6 812 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 TTC16Q8NEE8 873 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 SLC5A4Q9NY91 659 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 FAM53CQ9NYF3 392 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 PCDHA3Q9Y5H8 950 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 GTF2BQ00403 316 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 C1orf228Q6PIY5 440 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 CD302Q8IX05 232 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 WHRNQ9P202 907 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 FAM47DPA6NHR8 397 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 CST8O60676 142 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 NAMPTP43490 491 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 ROR1Q01973 937 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 MAML1Q92585 1016 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 LRRC4Q9HBW1 653 aa19.57■□□□□ 0.72
USP48-204ENST00000400301 NCANO14594 1321 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 SAT1P21673 171 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 Q3C1V9 767 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 CCDC125Q86Z20 511 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 HACE1Q8IYU2 909 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 GRAMD1AQ96CP6 724 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 FOXP3Q9BZS1 431 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 MTMR12Q9C0I1 747 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 SENP1Q9P0U3 644 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 IGLV3-22A0A075B6J6 115 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 CFAP73A6NFT4 308 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 AGPSO00116 658 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 PSTPIP1O43586 416 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 CALCAP01258 141 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.56■□□□□ 0.72
USP48-204ENST00000400301 CHST13Q8NET6 341 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 ALG3Q92685 438 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 MMP19Q99542 508 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 AGAP1Q9UPQ3 857 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 NOD1Q9Y239 953 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 MYH6P13533 1939 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 ATP9AO75110 1047 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 GCNT1Q02742 428 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 IER5Q5VY09 327 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 UBIAD1Q9Y5Z9 338 aa19.56■□□□□ 0.72
USP48-204ENST00000400301 TCF7P36402 384 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 IFI35P80217 286 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 FAM47CQ5HY64 1035 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 C3orf20Q8ND61 904 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 PRPF31Q8WWY3 499 aaKnown RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 SLC40A1Q9NP59 571 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 ALG13Q9NP73 1137 aaKnown RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 ATF7IP2Q5U623 682 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 SGSM3Q96HU1 749 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 MBOAT7Q96N66 472 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 ELP3Q9H9T3 547 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 MAGED2Q9UNF1 606 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 MYH7P12883 1935 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 TOM1L1O75674 476 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 BAG2O95816 211 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 PDGFRAP16234 1089 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 ARL1P40616 181 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 PDCD7Q8N8D1 485 aaKnown RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 NOP53Q9NZM5 478 aaKnown RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 WDR35Q9P2L0 1181 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 COL18A1P39060 1754 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 ESRRAP11474 423 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 TMPRSS15P98073 1019 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 IFRD2Q12894 506 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 ITGB3BPQ13352 177 aaPredicted RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 FAM71AQ8IYT1 594 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 DNAAF3Q8N9W5 541 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 MARF1Q9Y4F3 1742 aaKnown RBP19.55■□□□□ 0.72
USP48-204ENST00000400301 PCDHA2Q9Y5H9 948 aa19.55■□□□□ 0.72
USP48-204ENST00000400301 RIPK2O43353 540 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 PRELID2Q8N945 189 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 TMEM161BQ8NDZ6 487 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 N4BP2L2Q92802 583 aaPredicted RBP19.54■□□□□ 0.72
USP48-204ENST00000400301 KIF12Q96FN5 646 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms