RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 POLNQ7Z5Q5 900 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SYTL1Q8IYJ3 562 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 Q8N1X5 172 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 CISD2Q8N5K1 135 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 WWC2-AS2Q96NR7 200 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SLC2A13Q96QE2 648 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SLITRK6Q9H5Y7 841 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 MSL2Q9HCI7 577 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SLC13A4Q9UKG4 626 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SPO11Q9Y5K1 396 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SNX5Q9Y5X3 404 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 A0A087X0M5 115 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 A0A1B0GX30 115 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 POM121BA6NF01 834 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 PRAMEF25A6NGN4 478 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 TSPY2A6NKD2 308 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 F5H0A9 414 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 DNTTP04053 509 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ZNF888P0CJ79 500 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 TSPY3P0CV98 308 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 TSPY8P0CW00 308 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 PTGS1P23219 599 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 RPS19P39019 145 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 STAT1P42224 750 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 CLNS1AP54105 237 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 RRADP55042 308 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 TSPY1Q01534 308 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ALDH6A1Q02252 535 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 NEXNQ0ZGT2 675 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 FOXE3Q13461 319 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 KRTAP5-4Q6L8H1 288 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 JMJD6Q6NYC1 403 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 PLBD1Q6P4A8 553 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 C16orf59Q7L2K0 433 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 LIX1LQ8IVB5 337 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 NRSN1Q8IZ57 195 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 C2orf69Q8N8R5 385 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 APPL2Q8NEU8 664 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 OR10H5Q8NGA6 315 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 BRI3BPQ8WY22 251 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 EDAQ92838 391 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SH3KBP1Q96B97 665 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 COA7Q96BR5 231 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ACAP3Q96P50 834 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SORBS1Q9BX66 1292 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 C22orf23Q9BZE7 217 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 CXorf56Q9H5V9 222 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ZNF112Q9UJU3 913 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 OAZ3Q9UMX2 235 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SNX13Q9Y5W8 968 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC180Q9P1Z9 1646 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 C19orf81C9J6K1 198 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 H7C1D1 291 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ACKR2O00590 384 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 P4HA2O15460 535 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 HOXC11O43248 304 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 CDC14BO60729 498 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 RAD17O75943 681 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 HMGCRP04035 888 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 KRT15P19012 456 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ENPP1P22413 925 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 DEKP35659 375 aaKnown RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 HSPA7P48741 367 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 MEOX1P50221 254 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 DNM2P50570 870 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 TUBP50607 506 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 NR1H2P55055 460 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 NAP1L1P55209 391 aaKnown RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 TGFB2P61812 414 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ABHD18Q0P651 414 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 FOXO1Q12778 655 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 PSMD6Q15008 389 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ARHGAP44Q17R89 818 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 MPEG1Q2M385 716 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 GGT6Q6P531 493 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 RNF207Q6ZRF8 634 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 THEMISQ8N1K5 641 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 C7orf31Q8N865 590 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 RNF152Q8N8N0 203 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ANKRD52Q8NB46 1076 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 AFAP1L1Q8TED9 768 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 UCMAQ8WVF2 138 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC47Q96A33 483 aaKnown RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 APIPQ96GX9 242 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ASB2Q96Q27 587 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ELF4Q99607 663 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 CGRRF1Q99675 332 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 XPO4Q9C0E2 1151 aaKnown RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 INCENPQ9NQS7 918 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 OLA1Q9NTK5 396 aaKnown RBP4.68□□□□□ -1.66
HMGB1-204ENST00000399489 GALNT8Q9NY28 637 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 CEP72Q9P209 647 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 AASSQ9UDR5 926 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 ODF2LQ9ULJ1 636 aa4.68□□□□□ -1.66
HMGB1-204ENST00000399489 FOXN3O00409 490 aaPredicted RBP4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ARHGAP6O43182 974 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 DKC1O60832 514 aaKnown RBP eCLIP4.67□□□□□ -1.66
HMGB1-204ENST00000399489 ZBED4O75132 1171 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 SLPIP03973 132 aa4.67□□□□□ -1.66
HMGB1-204ENST00000399489 AKR1B1P15121 316 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms