RNA–Protein interactions for RNA: ENST00000399082.7

HLA-DQB1-203, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-203ENST00000399082 CSPG5O95196 566 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 HLA-DRAP01903 254 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KRT19P08727 400 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ATP1A3P13637 1013 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 FGFR3P22607 806 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TKTP29401 623 aaKnown RBP13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 GTF2H1P32780 548 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 FMO5P49326 533 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TAF6P49848 677 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MXI1P50539 228 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 AP3M2P53677 418 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 RBP5P82980 135 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 UBE3AQ05086 875 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KCNH2Q12809 1159 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 NCOA4Q13772 614 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KCNJ12Q14500 433 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TPD52L1Q16890 204 aaPredicted RBP13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MIIPQ5JXC2 388 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 RTP2Q5QGT7 225 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 LIMS2Q7Z4I7 341 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 LUZP1Q86V48 1076 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 VPS52Q8N1B4 723 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 AUTS2Q8WXX7 1259 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 APOBEC3GQ9HC16 384 aaKnown RBP13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MTMR10Q9NXD2 777 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 COQ4Q9Y3A0 265 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 REV3LO60673 3130 aa13.37□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PMM2O15305 246 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 STAU1O95793 577 aaKnown RBP13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 CTSAP10619 480 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KRT17Q04695 432 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 BIRC3Q13489 604 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PTPN14Q15678 1187 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TCP11X2Q5H9J9 407 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 FAM171A1Q5VUB5 890 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KIAA0319Q5VV43 1072 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KRT39Q6A163 491 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 SPOPLQ6IQ16 392 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 DEFB123Q8N688 67 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 LMO3Q8TAP4 145 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 HPDLQ96IR7 371 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 SENP8Q96LD8 212 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ZNF560Q96MR9 790 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PI4K2AQ9BTU6 479 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 NAT10Q9H0A0 1025 aaKnown RBP13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TSPY26PQ9H489 355 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 VRTNQ9H8Y1 702 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TLR9Q9NR96 1032 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 GDAP2Q9NXN4 497 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PCDHB8Q9UN66 801 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 NUB1Q9Y5A7 615 aa13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.36□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PRRC2BQ5JSZ5 2229 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 HIDE1A8MVS5 230 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KPNA7A9QM74 516 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ASS1P00966 412 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 AFPP02771 609 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 POU3F3P20264 500 aaPredicted RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 EEF1GP26641 437 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PNPLA4P41247 253 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MTIF2P46199 727 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 GLUD2P49448 558 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MYL7Q01449 175 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 DSG1Q02413 1049 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MRPL58Q14197 206 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 KRT31Q15323 416 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MAN2A1Q16706 1144 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 SV2CQ496J9 727 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PLPP4Q5VZY2 271 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 RSPO2Q6UXX9 243 aaPredicted RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ADGRD2Q7Z7M1 963 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 USP37Q86T82 979 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 FAM114A1Q8IWE2 563 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 LNX1Q8TBB1 728 aaPredicted RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 FAM200AQ8TCP9 573 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MYLIPQ8WY64 445 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MRPL38Q96DV4 380 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 CDX2Q99626 313 aaPredicted RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TCF25Q9BQ70 676 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TUBGCP2Q9BSJ2 902 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 LMAN2LQ9H0V9 348 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TAB2Q9NYJ8 693 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 LIMA1Q9UHB6 759 aaKnown RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 L1RE1Q9UN81 338 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 POLIQ9UNA4 740 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 NME7Q9Y5B8 376 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TIMM13Q9Y5L4 95 aaPredicted RBP13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 MTCH2Q9Y6C9 303 aa13.35□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ADAM12O43184 909 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TBC1D4O60343 1298 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 STX10O60499 249 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PHACTR2O75167 634 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 CYP11A1P05108 521 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ATICP31939 592 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 PIK3CAP42336 1068 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 ELAVL2Q12926 359 aaKnown RBP13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 TRPC3Q13507 836 aa13.34□□□□□ -0.27
HLA-DQB1-203ENST00000399082 SOWAHAQ2M3V2 549 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms