RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 FAM76AQ8TAV0 307 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CALR3Q96L12 384 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 VIPAS39Q9H9C1 493 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 UVRAGQ9P2Y5 699 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CPSF3Q9UKF6 684 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 MTUS1Q9ULD2 1270 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 C22orf31O95567 290 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 PIGRP01833 764 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 TBXAS1P24557 533 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-203ENST00000394269 GLRA4Q5JXX5 417 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 PRELID2Q8N945 189 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 WNT8AQ9H1J5 351 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 IFT122Q9HBG6 1241 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ZEB2O60315 1214 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ASS1P00966 412 aaKnown RBP11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ZBTB48P10074 688 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-203ENST00000394269 RARAP10276 462 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ATF7P17544 494 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-203ENST00000394269 PEX5P50542 639 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 MBTD1Q05BQ5 628 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 IFFO1Q0D2I5 559 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ZNF792Q3KQV3 632 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 SGO2Q562F6 1265 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 JADE1Q6IE81 842 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 C11orf63Q6NUN7 778 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 HAUS1Q96CS2 278 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 MCEEQ96PE7 176 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 NIF3L1Q9GZT8 377 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 CES2O00748 559 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 OPA1O60313 960 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ARF4P18085 180 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-203ENST00000394269 CLDN10P78369 228 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 MCL1Q07820 350 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 NNTQ13423 1086 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ACVR2BQ13705 512 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 ZNF667Q5HYK9 610 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 SESTD1Q86VW0 696 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 JAMLQ86YT9 394 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 NPLOC4Q8TAT6 608 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 TFAP2BQ92481 460 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 CCDC113Q9H0I3 377 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 AGAP1Q9UPQ3 857 aa11.85□□□□□ -0.51
TCOF1-203ENST00000394269 MROH7Q68CQ1 1323 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 CCDC66A2RUB6 948 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 GOLGA6L10A6NI86 522 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 HOXC6P09630 235 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 TTC27Q6P3X3 843 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 LEKR1Q6ZMV7 388 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 SLC13A5Q86YT5 568 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-203ENST00000394269 TAB3Q8N5C8 712 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-203ENST00000394269 RPS6KC1Q96S38 1066 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 TINF2Q9BSI4 451 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 FZD8Q9H461 694 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 SLITRK6Q9H5Y7 841 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 TJP2Q9UDY2 1190 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 DIS3Q9Y2L1 958 aaKnown RBP11.84□□□□□ -0.51
TCOF1-203ENST00000394269 PDE4DIPQ5VU43 2346 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 IGKV6-21A0A0C4DH24 114 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 PPFIA4O75335 1185 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 SLC26A2P50443 739 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 ZNF157P51786 506 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-203ENST00000394269 MAMLD1Q13495 774 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 GRIK4Q16099 956 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 TSHZ1Q6ZSZ6 1077 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 PLEKHH3Q7Z736 793 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 PRUNE1Q86TP1 453 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 ERICH1Q86X53 443 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 EXOC8Q8IYI6 725 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 MAML3Q96JK9 1138 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 HEXIM2Q96MH2 286 aaKnown RBP11.84□□□□□ -0.51
TCOF1-203ENST00000394269 ASIC3Q9UHC3 531 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.84□□□□□ -0.51
TCOF1-203ENST00000394269 PCDHA3Q9Y5H8 950 aa11.84□□□□□ -0.51
TCOF1-203ENST00000394269 KRT10P13645 584 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 TCF4P15884 667 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 POLR2BP30876 1174 aaKnown RBP11.83□□□□□ -0.51
TCOF1-203ENST00000394269 HSD17B3P37058 310 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 NOMO3P69849 1222 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 BEX3Q00994 111 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 PLCB3Q01970 1234 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 TNFAIP2Q03169 654 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 FAM182AQ5T1J6 154 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 FBXO25Q8TCJ0 367 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 WHAMMQ8TF30 809 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 FMO2Q99518 471 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 OSMRQ99650 979 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 RAB17Q9H0T7 212 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 SMYD3Q9H7B4 428 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 CEP83Q9Y592 693 aa11.83□□□□□ -0.51
TCOF1-203ENST00000394269 EVPLQ92817 2033 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 ZC3H4Q9UPT8 1303 aaKnown RBP11.83□□□□□ -0.52
TCOF1-203ENST00000394269 F8VP50 259 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 STRNO43815 780 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 GAS2O43903 313 aaKnown RBP11.83□□□□□ -0.52
TCOF1-203ENST00000394269 RALAP11233 206 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 TAS2R40P59535 323 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CUL1Q13616 776 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 AMHR2Q16671 573 aa11.83□□□□□ -0.52
TCOF1-203ENST00000394269 CDCA2Q69YH5 1023 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms