RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SLC5A4Q9NY91 659 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 ADAM22Q9P0K1 906 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 COL20A1Q9P218 1284 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 IP6K2Q9UHH9 426 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 PNMA3Q9UL41 463 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 CNTN6Q9UQ52 1028 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 L3MBTL1Q9Y468 752 aa10.59□□□□□ -0.71
COL17A1-203ENST00000393211 FAM170AA1A519 330 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SPDYE2BA6NHP3 402 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ALOX15BO15296 676 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 LIASO43766 372 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 EXTL3O43909 919 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 EDF1O60869 148 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TJP3O95049 919 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 RPSAP08865 295 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SPDYE6P0CI01 402 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TBXAS1P24557 533 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 RNASELQ05823 741 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SPP2Q13103 211 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 MAMLD1Q13495 774 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TMED2Q15363 201 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TRIP13Q15645 432 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ZKSCAN8Q15776 578 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 P3H1Q32P28 736 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ZACNQ401N2 412 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 WASHC2DQ5SRD0 308 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SLC39A4Q6P5W5 647 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 GSTA5Q7RTV2 222 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 PCGF5Q86SE9 256 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 VSIG1Q86XK7 387 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SEPT12Q8IYM1 358 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 IL31RAQ8NI17 732 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SYTL5Q8TDW5 730 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 CPA5Q8WXQ8 436 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 LRRC37BQ96QE4 947 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SMC6Q96SB8 1091 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TUBB6Q9BUF5 446 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 FRMD8P1Q9BZ68 369 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TRIM6Q9C030 488 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TRABDQ9H4I3 376 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 GPRC5CQ9NQ84 441 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SAR1AQ9NR31 198 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 PARVAQ9NVD7 372 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 PHTF1Q9UMS5 762 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SHOC2Q9UQ13 582 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SMAPO00193 183 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 WDR46O15213 610 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 DIAPH2O60879 1101 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 DGAT1O75907 488 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ZWINTO95229 277 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 LMNAP02545 664 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ASNSP08243 561 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TSHRP16473 764 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TAS2R40P59535 323 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 NOMO3P69849 1222 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 MAP3K10Q02779 954 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TAP1Q03518 808 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 NFX1Q12986 1120 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 PGM5Q15124 567 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 UGCGQ16739 394 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SLC45A4Q5BKX6 768 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 BZW1Q7L1Q6 419 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 APLFQ8IW19 511 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ALLCQ8N6M5 410 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 FEZF2Q8TBJ5 459 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 LRRC8CQ8TDW0 803 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 LPAR1Q92633 364 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 NKD2Q969F2 451 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF622Q969S3 477 aaKnown RBP eCLIP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 THOC1Q96FV9 657 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 C9orf72Q96LT7 481 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 AGBL1Q96MI9 1066 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 MYLK2Q9H1R3 596 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 MLXIPLQ9NP71 852 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 SAYSD1Q9NPB0 183 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TOPORSQ9NS56 1045 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 DDX56Q9NY93 547 aaKnown RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 PKD2L1Q9P0L9 805 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF70Q9UC06 446 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TBK1Q9UHD2 729 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 GGT7Q9UJ14 662 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 PCDHA10Q9Y5I2 948 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 STYXL1Q9Y6J8 313 aa10.58□□□□□ -0.72
COL17A1-203ENST00000393211 TCP10L2B9ZVM9 353 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 H0YIN7 160 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 NFIBO00712 420 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ABLIM1O14639 778 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 HNRNPDLO14979 420 aaKnown RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 HLA-DRAP01903 254 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 C4BPAP04003 597 aaKnown RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ITGAVP06756 1048 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ACO1P21399 889 aaKnown RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 CALB2P22676 271 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 GCAP28676 217 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 SF3A3Q12874 501 aaKnown RBP eCLIP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 SPDYE2Q495Y8 402 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 MIS18BP1Q6P0N0 1132 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 CENPUQ71F23 418 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ANO5Q75V66 913 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 FAM83AQ86UY5 434 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms