RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 HIST2H2AA3Q6FI13 130 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 ZNF668Q96K58 619 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 AGAP1Q9UPQ3 857 aa13.4□□□□□ -0.26
CCDC88C-204ENST00000389857 CPSF1Q10570 1443 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 CDHR2Q9BYE9 1310 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 KIF28PB7ZC32 967 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 TRIM49P0CI25 452 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 TRIM49CP0CI26 452 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 GUCY1A3Q02108 690 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 SETD3Q86TU7 594 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 SCFD2Q8WU76 684 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 KCND2Q9NZV8 630 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 ADGRA2Q96PE1 1338 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 TTC26A0AVF1 554 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 SMAPO00193 183 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 SPRP35270 261 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 PHKG1Q16816 387 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 CHMP1BQ7LBR1 199 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 DNAJC7Q99615 494 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 TMEM106CQ9BVX2 250 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 APPL1Q9UKG1 709 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 ADGRG1Q9Y653 693 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 TXNP10599 105 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 PRDX5P30044 214 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 KCNK10P57789 538 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 PDIA5Q14554 519 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 TRMT2AQ8IZ69 625 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 LBHD1Q9BQE6 289 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 FOXP3Q9BZS1 431 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 USE1Q9NZ43 259 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 STMN3Q9NZ72 180 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 POLBP06746 335 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 OOSP2Q86WS3 158 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC35G2Q8TBE7 412 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 RBBP8Q99708 897 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 ALG13Q9NP73 1137 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 MTO1Q9Y2Z2 717 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 EVPLLA8MZ36 301 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 ATP1A1P05023 1023 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 PDK1Q15118 436 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 AGBL1Q96MI9 1066 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 RAB6BQ9NRW1 208 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 IQCA1LA6NCM1 817 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 IRF1P10914 325 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 WDR72Q3MJ13 1102 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC7A14Q8TBB6 771 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 AMACRQ9UHK6 382 aa13.39□□□□□ -0.27
CCDC88C-204ENST00000389857 ARID5BQ14865 1188 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 IYDQ6PHW0 289 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 PAK5Q9P286 719 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 VPS9D1Q9Y2B5 631 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 DGAT1O75907 488 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 ACTN3Q08043 901 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 GTF3C2Q8WUA4 911 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 MCEEQ96PE7 176 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 KLHL11Q9NVR0 708 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 H2AFYO75367 372 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 ALDH1A2O94788 518 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 ANXA11P50995 505 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 HLFQ16534 295 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 NEU2Q9Y3R4 380 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 PDGFRAP16234 1089 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 HARS2P49590 506 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 TWF1Q12792 350 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 NMRK1Q9NWW6 199 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 MAP3K13O43283 966 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 NPEPPSP55786 919 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 CSTF3Q12996 717 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 RIBC1Q8N443 379 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 SPATA4Q8NEY3 305 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 PABPC5Q96DU9 382 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 RNF181Q9P0P0 153 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 CDY2AQ9Y6F7 541 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 CDY1Q9Y6F8 540 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 MAGEB2O15479 319 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 RGS2P41220 211 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 NCOA4Q13772 614 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 ARHGAP15Q53QZ3 475 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 FAM182BQ5T319 152 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 LDHDQ86WU2 507 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 DCP1BQ8IZD4 617 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 CPA5Q8WXQ8 436 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 PCMTD2Q9NV79 361 aa13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 PRG3Q9Y2Y8 225 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-204ENST00000389857 MTSS1O43312 755 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 TDP2O95551 362 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 SNRPFP62306 86 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 ANGPT1Q15389 498 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 PCSK7Q16549 785 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 XKR3Q5GH77 459 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 WLSQ5T9L3 541 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 HS6ST3Q8IZP7 471 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 SEPT5Q99719 369 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 CDH16O75309 829 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 MDH1P40925 334 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 RFC5P40937 340 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 RANBP1P43487 201 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 PTK7Q13308 1070 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 MB21D2Q8IYB1 491 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 ZNF512Q96ME7 567 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms