RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 B4GALNT4Q76KP1 1039 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 PTRH1Q86Y79 214 aaKnown RBP0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 KLHL6Q8WZ60 621 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 ERCC4Q92889 916 aaPredicted RBP0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 ATOH8Q96SQ7 321 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 CHRDL1Q9BU40 450 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 PHF20Q9BVI0 1012 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 CDT1Q9H211 546 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 KLC4Q9NSK0 619 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 INTS13Q9NVM9 706 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 IGSF9Q9P2J2 1179 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 BMPR1BO00238 502 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 FOXN3O00409 490 aaPredicted RBP0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 PODXLO00592 558 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 FOXP2O15409 715 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 TBX1O43435 398 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 LDHBP07195 334 aaKnown RBP0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 KRT15P19012 456 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 MAPK1P28482 360 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 NDUFV1P49821 464 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 GFRA1P56159 465 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 LGALS4P56470 323 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 KRTAP10-10P60014 251 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 ACSM2AQ08AH3 577 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 CERKLQ49MI3 558 aaPredicted RBP0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZNF497Q6ZNH5 498 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 STXBP4Q6ZWJ1 553 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 DTX2Q86UW9 622 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 MORC1Q86VD1 984 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 KRTAP11-1Q8IUC1 163 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 DCUN1D3Q8IWE4 304 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 FBXO17Q96EF6 278 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 RITA1Q96K30 269 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 PBKQ96KB5 322 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 FERD3LQ96RJ6 166 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 OSBPL6Q9BZF3 934 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 TMEM8AQ9HCN3 771 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 SERTAD4Q9NUC0 356 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 KBTBD4Q9NVX7 518 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 TENM3Q9P273 2699 aa0.11□□□□□ -2.39
RNU6-540P-201ENST00000384622 EDIL3O43854 480 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 SRSF10O75494 262 aaKnown RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 GJB6O95452 261 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 GAAP10253 952 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 NAT2P11245 290 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 CYP2A6P11509 494 aaPredicted RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 IL6STP40189 918 aaPredicted RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 KRTAP12-4P60329 112 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 RBM6P78332 1123 aaKnown RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 PMP22Q01453 160 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 EEF1A2Q05639 463 aaKnown RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 CAPRIN1Q14444 709 aaKnown RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 RRP12Q5JTH9 1297 aaKnown RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 SLC35F1Q5T1Q4 408 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 RSPO2Q6UXX9 243 aaPredicted RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZNF813Q6ZN06 617 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 DEF8Q6ZN54 512 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZNF804AQ7Z570 1209 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 OSTM1Q86WC4 334 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 SFTPA1Q8IWL2 248 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 FGFRL1Q8N441 504 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 C1orf159Q96HA4 380 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 ORAI2Q96SN7 254 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 CDC5LQ99459 802 aaKnown RBP0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 FOXB1Q99853 325 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 TUBB6Q9BUF5 446 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 IPPKQ9H8X2 491 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 THSD1Q9NS62 852 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 NR2E3Q9Y5X4 410 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 HIVEP2P31629 2446 aa0.1□□□□□ -2.39
RNU6-540P-201ENST00000384622 MEIOCA2RUB1 952 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 RASSF10A6NK89 507 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 KCNK3O14649 394 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 BUB3O43684 328 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 CNOT3O75175 753 aaKnown RBP0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 USP1O94782 785 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 RASGRP1O95267 797 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 AMY2AP04746 511 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 AMY2BP19961 511 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 GATA3P23771 443 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 PCSK6P29122 969 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 PXNP49023 591 aaPredicted RBP0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 NXPH1P58417 271 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SLC6A3Q01959 620 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 ROM1Q03395 351 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SEMA5AQ13591 1074 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SEC23AQ15436 765 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SLC4A8Q2Y0W8 1093 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 WASHC2DQ5SRD0 308 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZNF343Q6P1L6 599 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 KLHDC8BQ8IXV7 354 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 OIT3Q8WWZ8 545 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 RFKQ969G6 155 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 FERMT2Q96AC1 680 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 TMEM125Q96AQ2 219 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SF3B5Q9BWJ5 86 aaKnown RBP0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SEZ6LQ9BYH1 1024 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 SEMA4BQ9NPR2 832 aaPredicted RBP0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 CATSPERZQ9NTU4 200 aa0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 FNIP2Q9P278 1114 aa0.09□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms