RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HOMEZQ8IX15 550 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 KAT5Q92993 513 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 ANKRD36BP1Q96IX9 119 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 NT5C1BQ96P26 610 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 PADI3Q9ULW8 664 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 GOLGA6BA6NDN3 693 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 CST3P01034 146 aaPredicted RBP13.31□□□□□ -0.28
CIITA-202ENST00000381835 AP3M2P53677 418 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 YARSP54577 528 aaKnown RBP13.31□□□□□ -0.28
CIITA-202ENST00000381835 PAK2Q13177 524 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 NCOA4Q13772 614 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 LPIN1Q14693 890 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 PKN2Q16513 984 aaKnown RBP13.31□□□□□ -0.28
CIITA-202ENST00000381835 SKIDA1Q1XH10 827 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 TDRD12Q587J7 1177 aaKnown RBP13.31□□□□□ -0.28
CIITA-202ENST00000381835 WDR44Q5JSH3 913 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 FAM76AQ8TAV0 307 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 TATDN2Q93075 761 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 STK33Q9BYT3 514 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 ASB7Q9H672 318 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 AGPSO00116 658 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 PQBP1O60828 265 aaKnown RBP13.31□□□□□ -0.28
CIITA-202ENST00000381835 RECQL4O94761 1208 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 TNNC2P02585 160 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 JAM2P57087 298 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 POU5F1Q01860 360 aaKnown RBP13.31□□□□□ -0.28
CIITA-202ENST00000381835 ASIC2Q16515 512 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 SPOPLQ6IQ16 392 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 FAM126BQ8IXS8 530 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 TMEM130Q8N3G9 435 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 TRIM58Q8NG06 486 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 HINFPQ9BQA5 517 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 CXCL16Q9H2A7 254 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 RNF39Q9H2S5 420 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 C1orf112Q9NSG2 853 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 RNF19AQ9NV58 838 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 ARHGAP20Q9P2F6 1191 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 PARP2Q9UGN5 583 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 JRKLQ9Y4A0 524 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 IPPQ9Y573 584 aa13.31□□□□□ -0.28
CIITA-202ENST00000381835 GOLGA6CA6NDK9 693 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 ANKRD65E5RJM6 399 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 F8VZ95 297 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 TACC1O75410 805 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 GFPT2O94808 682 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 KRT19P08727 400 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 GOLGA6DP0CG33 693 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 RFX1P22670 979 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 CORO7P57737 925 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 CDK17Q00537 523 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 TMEM132DQ14C87 1099 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 DNAJC21Q5F1R6 531 aaKnown RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 FAM26DQ5JW98 314 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 SYN2Q92777 582 aaPredicted RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 ARMC5Q96C12 935 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 CRISPLD2Q9H0B8 497 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 ERVK-5Q9HDB9 667 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 GOLGA6AQ9NYA3 693 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 AIPL1Q9NZN9 384 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 KLK14Q9P0G3 267 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 SNX12Q9UMY4 172 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 CAND2O75155 1236 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 IBSPP21815 317 aaPredicted RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 STAT1P42224 750 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 MNX1P50219 401 aaPredicted RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 MFAP3P55082 362 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 MYL6P60660 151 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 TRPC3Q13507 836 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 TTC31Q49AM3 519 aaPredicted RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 HGSNATQ68CP4 663 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 CREG2Q8IUH2 290 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 MMGT1Q8N4V1 131 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 SMG8Q8ND04 991 aaKnown RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 HELQQ8TDG4 1101 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 DIS3LQ8TF46 1054 aaKnown RBP13.3□□□□□ -0.28
CIITA-202ENST00000381835 PPM1EQ8WY54 764 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 KIF12Q96FN5 646 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 KREMEN1Q96MU8 473 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 SEZ6LQ9BYH1 1024 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 IMPG2Q9BZV3 1241 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 GPR88Q9GZN0 384 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 DEF6Q9H4E7 631 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 RALGAPA2Q2PPJ7 1873 aa13.3□□□□□ -0.28
CIITA-202ENST00000381835 FOXN3O00409 490 aaPredicted RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 ZNF263O14978 683 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 ZC3H11AO75152 810 aaKnown RBP eCLIP13.29□□□□□ -0.28
CIITA-202ENST00000381835 SOX5P35711 763 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 EIF4A3P38919 411 aaKnown RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 USP8P40818 1118 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 NOP14P78316 857 aaKnown RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 KLHL30Q0D2K2 578 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 GLRA4Q5JXX5 417 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 SND1Q7KZF4 910 aaKnown RBP eCLIP13.29□□□□□ -0.28
CIITA-202ENST00000381835 IRF2BP2Q7Z5L9 587 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 AENQ8WTP8 325 aaKnown RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 SNX27Q96L92 541 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 IFIH1Q9BYX4 1025 aaKnown RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 CHST12Q9NRB3 414 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 FAM105AQ9NUU6 356 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 PCDHB2Q9Y5E7 798 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms