RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ACO2Q99798 780 aaKnown RBP14.24□□□□□ -0.13
CCDC3-202ENST00000378839 ASCC2Q9H1I8 757 aaPredicted RBP14.24□□□□□ -0.13
CCDC3-202ENST00000378839 DNAJC17Q9NVM6 304 aaKnown RBP14.24□□□□□ -0.13
CCDC3-202ENST00000378839 TRAPPC3O43617 180 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 ECEL1O95672 775 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 ASS1P00966 412 aaKnown RBP14.24□□□□□ -0.13
CCDC3-202ENST00000378839 IQCF3P0C7M6 154 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 CD58P19256 250 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 BYSLQ13895 437 aaKnown RBP14.24□□□□□ -0.13
CCDC3-202ENST00000378839 METTL7BQ6UX53 244 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 PHF13Q86YI8 300 aaPredicted RBP14.24□□□□□ -0.13
CCDC3-202ENST00000378839 BRSK2Q8IWQ3 736 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 TFAP2BQ92481 460 aa14.24□□□□□ -0.13
CCDC3-202ENST00000378839 TCRBV5S1A1TA0A578 114 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 TLDC2A0PJX2 215 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 MYBL1P10243 752 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 BRD2P25440 801 aaKnown RBP14.23□□□□□ -0.13
CCDC3-202ENST00000378839 MOGSQ13724 837 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 ODF2Q5BJF6 829 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 SEPT1Q8WYJ6 367 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 FAM212AQ96EL1 285 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 MINDY3Q9H8M7 445 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 NRBP2Q9NSY0 501 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 RBPJLQ9UBG7 517 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 USTQ9Y2C2 406 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 A0A0G2JLL6 359 aaPredicted RBP14.23□□□□□ -0.13
CCDC3-202ENST00000378839 DENND2CQ68D51 928 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 CDCA2Q69YH5 1023 aaPredicted RBP14.23□□□□□ -0.13
CCDC3-202ENST00000378839 PRRT2Q7Z6L0 340 aaPredicted RBP14.23□□□□□ -0.13
CCDC3-202ENST00000378839 GLIS1Q8NBF1 620 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 RNF149Q8NC42 400 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 PDGFCQ9NRA1 345 aa14.23□□□□□ -0.13
CCDC3-202ENST00000378839 PASKQ96RG2 1323 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 FAM107AO95990 144 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 LDHAP00338 332 aaKnown RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 WEE2P0C1S8 567 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 GJC1P36383 396 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 BPIFB4P59827 614 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PPP1R7Q15435 360 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 TNFAIP8L3Q5GJ75 292 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 CCDC25Q86WR0 208 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 FBXO16Q8IX29 292 aaPredicted RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 ACSF2Q96CM8 615 aaPredicted RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 TJP2Q9UDY2 1190 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 IGKV6-21A0A0C4DH24 114 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 A6NNZ2 444 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PI4K2BG5E9Z4 385 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 HOXC6P09630 235 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 RARGP13631 454 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 MMP8P22894 467 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 EIF3BP55884 814 aaKnown RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 OSTNP61366 133 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PLCB4Q15147 1175 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 TUBB8Q3ZCM7 444 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 MAF1Q9H063 256 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 CDC42EP4Q9H3Q1 356 aaKnown RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 CPSF3Q9UKF6 684 aaKnown RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 TLR3O15455 904 aaKnown RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 CSDE1O75534 798 aaKnown RBP14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PAEPP09466 180 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 KRT10P13645 584 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 SLC1A1P43005 524 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 MAGEA9P43362 315 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 VPS41P49754 854 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 NEDD9Q14511 834 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 CCDC38Q502W7 563 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 EEF1DP3Q658K8 133 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 ZPBP2Q6X784 338 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PACS2Q86VP3 889 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PGM2Q96G03 612 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 FAM81BQ96LP2 452 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 XYLT2Q9H1B5 865 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 PTPRHQ9HD43 1115 aa14.22□□□□□ -0.13
CCDC3-202ENST00000378839 MCM3APO60318 1980 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 GMNCA6NCL1 334 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 F8VP50 259 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 TOM1L1O75674 476 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 CREB1P16220 341 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 ABCD1P33897 745 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 ITGA8P53708 1063 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 AUHQ13825 339 aaKnown RBP14.21□□□□□ -0.13
CCDC3-202ENST00000378839 SPRED3Q2MJR0 410 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 CELF3Q5SZQ8 465 aaKnown RBP14.21□□□□□ -0.13
CCDC3-202ENST00000378839 CYTH4Q9UIA0 394 aa14.21□□□□□ -0.13
CCDC3-202ENST00000378839 LGR5O75473 907 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 PROZP22891 400 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 ASPAP45381 313 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 MCL1Q07820 350 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 PTK6Q13882 451 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 FAM160B1Q5W0V3 765 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 C6orf89Q6UWU4 347 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 SCARA5Q6ZMJ2 495 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 RHPN2Q8IUC4 686 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 WDR49Q8IV35 697 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 FEZF2Q8TBJ5 459 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 ATXN2LQ8WWM7 1075 aaKnown RBP14.21□□□□□ -0.14
CCDC3-202ENST00000378839 JPH2Q9BR39 696 aaPredicted RBP14.21□□□□□ -0.14
CCDC3-202ENST00000378839 TCHPQ9BT92 498 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 TSPYL1Q9H0U9 437 aa14.21□□□□□ -0.14
CCDC3-202ENST00000378839 CISHQ9NSE2 258 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms