RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 GLRA2P23416 452 aa15.34■□□□□ 0.05
TCOF1-202ENST00000377797 RRM1P23921 792 aa15.34■□□□□ 0.05
TCOF1-202ENST00000377797 ARHGAP25P42331 645 aa15.34■□□□□ 0.05
TCOF1-202ENST00000377797 CISHQ9NSE2 258 aa15.34■□□□□ 0.05
TCOF1-202ENST00000377797 CPSF3Q9UKF6 684 aaKnown RBP15.34■□□□□ 0.05
TCOF1-202ENST00000377797 LGALS2P05162 132 aa15.33■□□□□ 0.05
TCOF1-202ENST00000377797 GJC2Q5T442 439 aaPredicted RBP15.33■□□□□ 0.05
TCOF1-202ENST00000377797 ANKRD20A3Q5VUR7 823 aa15.33■□□□□ 0.05
TCOF1-202ENST00000377797 MMGT1Q8N4V1 131 aa15.33■□□□□ 0.05
TCOF1-202ENST00000377797 PGBD4Q96DM1 585 aa15.33■□□□□ 0.05
TCOF1-202ENST00000377797 USP54Q70EL1 1684 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 LRRIQ3A6PVS8 624 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-202ENST00000377797 DDX3XO00571 662 aaKnown RBP eCLIP15.33■□□□□ 0.049e-17■■□□□ 11.8
TCOF1-202ENST00000377797 PHF2O75151 1096 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 LYPLA2O95372 231 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 TROVE2P10155 538 aaKnown RBP eCLIP15.33■□□□□ 0.04
TCOF1-202ENST00000377797 WDR59Q6PJI9 974 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-202ENST00000377797 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.33■□□□□ 0.049e-9■■□□□ 13.4
TCOF1-202ENST00000377797 SLC38A7Q9NVC3 462 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 KLHL14Q9P2G3 628 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 PRLRP16471 622 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 CARSP49589 748 aaKnown RBP15.33■□□□□ 0.04
TCOF1-202ENST00000377797 HP1BP3Q5SSJ5 553 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-202ENST00000377797 CELF4Q9BZC1 486 aaKnown RBP15.33■□□□□ 0.04
TCOF1-202ENST00000377797 AFG3L2Q9Y4W6 797 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 BMT2Q1RMZ1 405 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 IZUMO3Q5VZ72 239 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 C1orf228Q6PIY5 440 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 DLK2Q6UY11 383 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 BBS5Q8N3I7 341 aa15.33■□□□□ 0.04
TCOF1-202ENST00000377797 FGFR4P22455 802 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 THPOP40225 353 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 IL9RQ01113 521 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 PSMD6Q15008 389 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 ZKSCAN8Q15776 578 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-202ENST00000377797 AMHR2Q16671 573 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 SV2CQ496J9 727 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 DDX42Q86XP3 938 aaKnown RBP eCLIP15.32■□□□□ 0.04
TCOF1-202ENST00000377797 LRRC8CQ8TDW0 803 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 KAT5Q92993 513 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 TINF2Q9BSI4 451 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 KLHL8Q9P2G9 620 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-202ENST00000377797 PRKAG2Q9UGJ0 569 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 CICQ96RK0 1608 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-202ENST00000377797 SRGAP2BP0DMP2 458 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 CYP2C19P33261 490 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 GNL1P36915 607 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-202ENST00000377797 TAF6P49848 677 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 ARSEP51690 589 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 EFHC2Q5JST6 749 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 SLC9A9Q8IVB4 645 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 SNF8Q96H20 258 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 STRCQ7RTU9 1775 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 RNF180Q86T96 592 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 TLK2Q86UE8 772 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 BRSK2Q8IWQ3 736 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 CD302Q8IX05 232 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 CFAP36Q96G28 342 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 FAM118BQ9BPY3 351 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 RNF225M0QZC1 329 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-202ENST00000377797 MT-ND3P03897 115 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 PLCB4Q15147 1175 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 FOXR2Q6PJQ5 311 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 ZSWIM1Q9BR11 485 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 SIK2Q9H0K1 926 aa15.32■□□□□ 0.04
TCOF1-202ENST00000377797 A0A0U1RQJ8 604 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 PBX1P40424 430 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 GCNT1Q02742 428 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 IQSEC1Q6DN90 963 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 GLB1LQ6UWU2 654 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 ADRB2P07550 413 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 ZNF131P52739 623 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 PDCLQ13371 301 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 SMTNL2Q2TAL5 461 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 JAMLQ86YT9 394 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 DNAJB3Q8WWF6 145 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 CNOT10Q9H9A5 744 aaKnown RBP15.31■□□□□ 0.04
TCOF1-202ENST00000377797 C4BP0C0L5 1744 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 KBTBD13C9JR72 458 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 EIF3EP60228 445 aaKnown RBP15.31■□□□□ 0.04
TCOF1-202ENST00000377797 HEATR6Q6AI08 1181 aaKnown RBP15.31■□□□□ 0.04
TCOF1-202ENST00000377797 PCGF5Q86SE9 256 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 RUBCNQ92622 972 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 PNKPQ96T60 521 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 CA4P22748 312 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 ROR1Q01973 937 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 GOLGA7BQ2TAP0 167 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 BAP1Q92560 729 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 RILPQ96NA2 401 aa15.31■□□□□ 0.04
TCOF1-202ENST00000377797 ZNF214Q9UL59 606 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-202ENST00000377797 TYW5A2RUC4 315 aaKnown RBP15.3■□□□□ 0.04
TCOF1-202ENST00000377797 CPB1P15086 417 aa15.3■□□□□ 0.04
TCOF1-202ENST00000377797 PNPLA4P41247 253 aa15.3■□□□□ 0.04
TCOF1-202ENST00000377797 GARSP41250 739 aaKnown RBP15.3■□□□□ 0.04
TCOF1-202ENST00000377797 ACOT1Q86TX2 421 aa15.3■□□□□ 0.04
TCOF1-202ENST00000377797 A0A0A6YYK5 440 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-202ENST00000377797 TRAPPC3O43617 180 aa15.3■□□□□ 0.04
TCOF1-202ENST00000377797 PPM1FP49593 454 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-202ENST00000377797 HSDL1Q3SXM5 330 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms