RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 WEE2P0C1S8 567 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 CYP11B1P15538 503 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 CYP3A5P20815 502 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 IBSPP21815 317 aaPredicted RBP19.94■□□□□ 0.78
CLN3-206ENST00000360019 BMS1Q14692 1282 aaKnown RBP19.94■□□□□ 0.78
CLN3-206ENST00000360019 TMEM270Q6UE05 265 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 NOP9Q86U38 636 aaKnown RBP19.94■□□□□ 0.78
CLN3-206ENST00000360019 RNF169Q8NCN4 708 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 DBF4BQ8NFT6 615 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 SLC30A5Q8TAD4 765 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 SCLYQ96I15 445 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 AGPAT1Q99943 283 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 BCO2Q9BYV7 579 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 PPP1R12CQ9BZL4 782 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 LZTFL1Q9NQ48 299 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 MIOSQ9NXC5 875 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 R3HCC1Q9Y3T6 440 aaKnown RBP19.94■□□□□ 0.78
CLN3-206ENST00000360019 PCDHB4Q9Y5E5 795 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 PCDHA13Q9Y5I0 950 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 TANC1Q9C0D5 1861 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 TET1Q8NFU7 2136 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 GOLGA6L9A6NEM1 432 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 XPOTO43592 962 aaKnown RBP19.93■□□□□ 0.78
CLN3-206ENST00000360019 CALCAP01258 141 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 SKIP12755 728 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 CD58P19256 250 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 ARHGAP25P42331 645 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 NAB2Q15742 525 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 GLYCTKQ8IVS8 523 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 FAXDC2Q96IV6 333 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 FTHL17Q9BXU8 183 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 SDCBP2Q9H190 292 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 TSPYL2Q9H2G4 693 aaPredicted RBP19.93■□□□□ 0.78
CLN3-206ENST00000360019 RSAD1Q9HA92 442 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 CISHQ9NSE2 258 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 TBX21Q9UL17 535 aa19.93■□□□□ 0.78
CLN3-206ENST00000360019 PIRO00625 290 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 CHRNB2P17787 502 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 RAP1GAPP47736 663 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 VAV2P52735 878 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 ZNF132P52740 706 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 CCL23P55773 120 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 LRRC26Q2I0M4 334 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 SLC24A5Q71RS6 500 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 VPS36Q86VN1 386 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 PALB2Q86YC2 1186 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 LRRC52Q8N7C0 313 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 DDX1Q92499 740 aaKnown RBP19.92■□□□□ 0.78
CLN3-206ENST00000360019 PGBD4Q96DM1 585 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 RPS6KC1Q96S38 1066 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 TMEM106CQ9BVX2 250 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 SMYD3Q9H7B4 428 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 NAGPAQ9UK23 515 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 PDE6CP51160 858 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 SCNN1GP51170 649 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 CDH8P55286 799 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 TCTN1Q2MV58 587 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 TAF3Q5VWG9 929 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 KIAA1328Q86T90 577 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 RBBP8NLQ8NC74 664 aaPredicted RBP19.92■□□□□ 0.78
CLN3-206ENST00000360019 MCOLN1Q9GZU1 580 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 LACRTQ9GZZ8 138 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 TRIM10Q9UDY6 481 aa19.92■□□□□ 0.78
CLN3-206ENST00000360019 SCN5AQ14524 2016 aa19.91■□□□□ 0.78
CLN3-206ENST00000360019 CYP2C18P33260 490 aa19.91■□□□□ 0.78
CLN3-206ENST00000360019 MAGEA1P43355 309 aa19.91■□□□□ 0.78
CLN3-206ENST00000360019 FAM189BP81408 668 aa19.91■□□□□ 0.78
CLN3-206ENST00000360019 MYO1EQ12965 1108 aa19.91■□□□□ 0.78
CLN3-206ENST00000360019 PTPN14Q15678 1187 aa19.91■□□□□ 0.78
CLN3-206ENST00000360019 RPUSD2Q8IZ73 545 aaKnown RBP19.91■□□□□ 0.78
CLN3-206ENST00000360019 THP07101 528 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 TNFAIP3P21580 790 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 LRPAP1P30533 357 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 FMO1Q01740 532 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 ARHGAP29Q52LW3 1261 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 ALKBH5Q6P6C2 394 aaKnown RBP19.9■□□□□ 0.78
CLN3-206ENST00000360019 ZNF662Q6ZS27 426 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 DNAAF5Q86Y56 855 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 UBN1Q9NPG3 1134 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 PRDM10Q9NQV6 1147 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 SLC38A7Q9NVC3 462 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 SPTLC1O15269 473 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 EOMESO95936 686 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 CXCL10P02778 98 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 MMEP08473 750 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 CLTBP09497 229 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 P4HA1P13674 534 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 TNNC1P63316 161 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 CDR2Q01850 454 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 CCDC122Q5T0U0 273 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 NECAB2Q7Z6G3 386 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 SEPT8Q92599 483 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 PCDHB18PQ96TA0 734 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 PACSIN1Q9BY11 444 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 IRX2Q9BZI1 471 aaPredicted RBP19.9■□□□□ 0.78
CLN3-206ENST00000360019 CYP3A43Q9HB55 503 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 TMEM39AQ9NV64 488 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 CACNG4Q9UBN1 327 aa19.9■□□□□ 0.78
CLN3-206ENST00000360019 BPIFB4P59827 614 aa19.89■□□□□ 0.77
CLN3-206ENST00000360019 ZNF394Q53GI3 561 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms