RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 KIF5CO60282 957 aa20■□□□□ 0.79
CLN3-204ENST00000357857 SKIP12755 728 aa20■□□□□ 0.79
CLN3-204ENST00000357857 P4HA1P13674 534 aa20■□□□□ 0.79
CLN3-204ENST00000357857 MYO1EQ12965 1108 aa20■□□□□ 0.79
CLN3-204ENST00000357857 PDZRN4Q6ZMN7 1036 aaPredicted RBP20■□□□□ 0.79
CLN3-204ENST00000357857 RBBP8NLQ8NC74 664 aaPredicted RBP20■□□□□ 0.79
CLN3-204ENST00000357857 BCO2Q9BYV7 579 aa20■□□□□ 0.79
CLN3-204ENST00000357857 CISHQ9NSE2 258 aa20■□□□□ 0.79
CLN3-204ENST00000357857 GIT1Q9Y2X7 761 aa20■□□□□ 0.79
CLN3-204ENST00000357857 TANC1Q9C0D5 1861 aa20■□□□□ 0.79
CLN3-204ENST00000357857 A0A0U1RQF3 1178 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 MEIS3P2A8K0S8 358 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 PITPNM1O00562 1244 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 WEE2P0C1S8 567 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 CHRNB2P17787 502 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 CD58P19256 250 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 CYP3A5P20815 502 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 GNG11P61952 73 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 CDR2Q01850 454 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 TAF3Q5VWG9 929 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 C9orf57Q5W0N0 161 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 SYT10Q6XYQ8 523 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 ANKRD33Q7Z3H0 272 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 LPPQ93052 612 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 TDRD15B5MCY1 1934 aaKnown RBP19.99■□□□□ 0.79
CLN3-204ENST00000357857 PTGESO14684 152 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 MLH1P40692 756 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 AGMOQ6ZNB7 445 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 LRRC52Q8N7C0 313 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 DDX1Q92499 740 aaKnown RBP19.99■□□□□ 0.79
CLN3-204ENST00000357857 ZNF592Q92610 1267 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 PGBD4Q96DM1 585 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 ZFP42Q96MM3 310 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 RPS6KC1Q96S38 1066 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 GAD1Q99259 594 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 IRX2Q9BZI1 471 aaPredicted RBP19.99■□□□□ 0.79
CLN3-204ENST00000357857 ATP8B3O60423 1300 aa19.99■□□□□ 0.79
CLN3-204ENST00000357857 BRCA2P51587 3418 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 ANO9A1A5B4 782 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 MMEP08473 750 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 GJA8P48165 433 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 ZNF132P52740 706 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 TNNC1P63316 161 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 FMO1Q01740 532 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 ZNF677Q86XU0 584 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 ANKLE1Q8NAG6 615 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 PPP1R10Q96QC0 940 aaKnown RBP19.98■□□□□ 0.79
CLN3-204ENST00000357857 PACSIN1Q9BY11 444 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 SMYD3Q9H7B4 428 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 CYP3A43Q9HB55 503 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 MYO1AQ9UBC5 1043 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 DNAI1Q9UI46 699 aa19.98■□□□□ 0.79
CLN3-204ENST00000357857 DCDC2CA8MYV0 355 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 PPEF2O14830 753 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 CALCAP01258 141 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 COL6A1P12109 1028 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 ATF7P17544 494 aaPredicted RBP19.97■□□□□ 0.79
CLN3-204ENST00000357857 RAP1GAPP47736 663 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 ZNF569Q5MCW4 686 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 PALB2Q86YC2 1186 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 RNF169Q8NCN4 708 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 KIF18AQ8NI77 898 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 DIS3LQ8TF46 1054 aaKnown RBP19.97■□□□□ 0.79
CLN3-204ENST00000357857 SDCBP2Q9H190 292 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 RGS18Q9NS28 235 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 SLC38A7Q9NVC3 462 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 INTUQ9ULD6 942 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 DUSP10Q9Y6W6 482 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 MYH10P35580 1976 aa19.97■□□□□ 0.79
CLN3-204ENST00000357857 SCN5AQ14524 2016 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 ARL5CA6NH57 179 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 PIRO00625 290 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 H2AFZP0C0S5 128 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 IBSPP21815 317 aaPredicted RBP19.96■□□□□ 0.79
CLN3-204ENST00000357857 GNA15P30679 374 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 SOX4Q06945 474 aaPredicted RBP19.96■□□□□ 0.79
CLN3-204ENST00000357857 TRIM60Q495X7 471 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 C1orf53Q5VUE5 145 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 H2AFVQ71UI9 128 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 ECHDC2Q86YB7 292 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 ZNF560Q96MR9 790 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 TOX2Q96NM4 488 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 PCDHB18PQ96TA0 734 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 FTHL17Q9BXU8 183 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 RSAD1Q9HA92 442 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 UBN1Q9NPG3 1134 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 MACROD2A1Z1Q3 448 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 TMCO5BA8MYB1 307 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 NBNO60934 754 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 THP07101 528 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 CDH8P55286 799 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 TLE2Q04725 743 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 RTN4RL1Q86UN2 441 aaPredicted RBP19.96■□□□□ 0.79
CLN3-204ENST00000357857 GSTCDQ8NEC7 633 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 SECISBP2LQ93073 1101 aaKnown RBP19.96■□□□□ 0.79
CLN3-204ENST00000357857 WDR24Q96S15 920 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 FAM124BQ9H5Z6 455 aaPredicted RBP19.96■□□□□ 0.79
CLN3-204ENST00000357857 GOLGA2P5Q9HBQ8 144 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 PAXBP1Q9Y5B6 917 aa19.96■□□□□ 0.79
CLN3-204ENST00000357857 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms