RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 ALCAMQ13740 583 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CYB5D1Q6P9G0 228 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 TLK2Q86UE8 772 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 TMEM130Q8N3G9 435 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 XXYLT1Q8NBI6 393 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 RNF149Q8NC42 400 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 LMO3Q8TAP4 145 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 FBXO25Q8TCJ0 367 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CCT6BQ92526 530 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CHMP6Q96FZ7 201 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 FAM167AQ96KS9 214 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 IFT74Q96LB3 600 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 XPO6Q96QU8 1125 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 PABPC3Q9H361 631 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 IFT122Q9HBG6 1241 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SETD4Q9NVD3 440 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 HAUS2Q9NVX0 235 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 DAAM1Q9Y4D1 1078 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 K7ERI5 159 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 HNRNPDLO14979 420 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 VTNP04004 478 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 NUDT17P0C025 328 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ELNP15502 786 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ACOT2P49753 483 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 VEGFBP49765 207 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SLC26A2P50443 739 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CDR1P51861 262 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 PLTPP55058 493 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ZNF200P98182 395 aaPredicted RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SPDYCQ5MJ68 293 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 UBAP2Q5T6F2 1119 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ZDHHC24Q6UX98 284 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 FAM228AQ86W67 206 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 RNF25Q96BH1 459 aaPredicted RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 FBXL18Q96ME1 805 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ZNF317Q96PQ6 595 aaPredicted RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 MKNK1Q9BUB5 465 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ADAM7Q9H2U9 754 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CNOT10Q9H9A5 744 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CREBZFQ9NS37 354 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SNX24Q9Y343 169 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ABLIM1O14639 778 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 KIAA0391O15091 583 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CHN1P15882 459 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 GCLMP48507 274 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 APLP1P51693 650 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 PMS2P54278 862 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 NLRP11P59045 1033 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SNRNP35Q16560 246 aaKnown RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 LACTB2Q53H82 288 aaPredicted RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 BRDTQ58F21 947 aaPredicted RBP9.18□□□□□ -0.94
TRIM55-204ENST00000353317 IER5Q5VY09 327 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 JAMLQ86YT9 394 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 DEPTORQ8TB45 409 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 POMGNT1Q8WZA1 660 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 ZNF516Q92618 1163 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CENPTQ96BT3 561 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 C18orf8Q96DM3 657 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SGSM3Q96HU1 749 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 NLRP4Q96MN2 994 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 FAM129AQ9BZQ8 928 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 CDHR5Q9HBB8 845 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 SLC5A4Q9NY91 659 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 FRMD4BQ9Y2L6 1034 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 STYXL1Q9Y6J8 313 aa9.18□□□□□ -0.94
TRIM55-204ENST00000353317 PTPRJQ12913 1337 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 GOLGA6L10A0A0M3HER8 536 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 TLDC2A0PJX2 215 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 TULP1O00294 542 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 FAM189A1O60320 539 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 CYBAP13498 195 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 TNFSF9P41273 254 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 MMP13P45452 471 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 MCCD1P59942 119 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 SF3A3Q12874 501 aaKnown RBP eCLIP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 SLC29A2Q14542 456 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 DGKDQ16760 1214 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 LMBRD2Q68DH5 695 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 CDCA2Q69YH5 1023 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 PHLDB3Q6NSJ2 640 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 MTHFD1LQ6UB35 978 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 HOOK3Q86VS8 718 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 PARP9Q8IXQ6 854 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 ZDHHC14Q8IZN3 488 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 PARD3BQ8TEW8 1205 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 ATXN2LQ8WWM7 1075 aaKnown RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 SEMA4DQ92854 862 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 KCNN1Q92952 543 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 CCDC127Q96BQ5 260 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 PGM2Q96G03 612 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 NAP1L3Q99457 506 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 FAM213AQ9BRX8 229 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 CXorf56Q9H5V9 222 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 SEPT11Q9NVA2 429 aaKnown RBP9.17□□□□□ -0.94
TRIM55-204ENST00000353317 APEX2Q9UBZ4 518 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 ALG6Q9Y672 507 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 A0A087WZ62 844 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 ANKRD62A6NC57 917 aa9.17□□□□□ -0.94
TRIM55-204ENST00000353317 SMIM23A6NLE4 172 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms