RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 C11orf63Q6NUN7 778 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 C1orf186Q6ZWK4 172 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 TMC3Q7Z5M5 1100 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 METTL23Q86XA0 190 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 MSL3Q8N5Y2 521 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 C3orf20Q8ND61 904 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 TATDN2Q93075 761 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 GDF3Q9NR23 364 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 FRMPD4Q14CM0 1322 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 TMEM150BA6NC51 233 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 TISP43B9A030 160 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 DPEP1P16444 411 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 SOX10P56693 466 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 RBP5P82980 135 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 MAP7Q14244 749 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 PID1Q7Z2X4 250 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 PARD3BQ8TEW8 1205 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 SLC5A5Q92911 643 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 PPWD1Q96BP3 646 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 ALKBH8Q96BT7 664 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 FAM161BQ96MY7 647 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 TTC1Q99614 292 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 FAM129AQ9BZQ8 928 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 ZNF263O14978 683 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 DIAPH2O60879 1101 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 ZC3H11AO75152 810 aaKnown RBP eCLIP7.57□□□□□ -1.2
VCAN-202ENST00000342785 SYF2O95926 243 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 GMPSP49915 693 aaPredicted RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 SEPT6Q14141 434 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 FAM193BQ96PV7 902 aaPredicted RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 GANQ9H2C0 597 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 KCNN4O15554 427 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 TLR2O60603 784 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 OATP04181 439 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 STX1BP61266 288 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 IER5Q5VY09 327 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 ARHGEF19Q8IW93 802 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 EIF4E1BA6NMX2 242 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 LMNAP02545 664 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 CYP3A4P08684 503 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 PYGMP11217 842 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 ERFP50548 548 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 KPNA2P52292 529 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 CXCL9Q07325 125 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 RWDD4Q6NW29 188 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 KCNV1Q6PIU1 500 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 KRT35Q92764 455 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 ZKSCAN4Q969J2 545 aaPredicted RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 ACAP3Q96P50 834 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 PPCSQ9HAB8 311 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 ZFATQ9P243 1243 aa7.57□□□□□ -1.2
VCAN-202ENST00000342785 IPO11Q9UI26 975 aaKnown RBP7.57□□□□□ -1.2
VCAN-202ENST00000342785 CES2O00748 559 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 OGTO15294 1046 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 CYP24A1Q07973 514 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 PPP3CAQ08209 521 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 ZNF384Q8TF68 577 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 LBHD1Q9BQE6 289 aaPredicted RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 FAM198AQ9UFP1 575 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 TTC4O95801 387 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 MX2P20592 715 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 COBLL1Q53SF7 1204 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 TAF1BQ53T94 588 aaPredicted RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 ATF7IP2Q5U623 682 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 C1orf146Q5VVC0 180 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 CERKQ8TCT0 537 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 WWP1Q9H0M0 922 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 SMARCAD1Q9H4L7 1026 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 RSAD1Q9HA92 442 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 NPHS2Q9NP85 383 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 SPATS2LQ9NUQ6 558 aaKnown RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 GGA3Q9NZ52 723 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 NFAT5O94916 1531 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 RARAP10276 462 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 RBBP5Q15291 538 aaKnown RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 CYP4A22Q5TCH4 519 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 CYB5D1Q6P9G0 228 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 APTXQ7Z2E3 356 aaKnown RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 BBS5Q8N3I7 341 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 CCNYL1Q8N7R7 359 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 RNF139Q8WU17 664 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 HSD17B14Q9BPX1 270 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 UBN1Q9NPG3 1134 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 ACP6Q9NPH0 428 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 ASB14A6NK59 587 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 APOL1O14791 398 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 SKOR1P84550 965 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 ELMO3Q96BJ8 720 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 TSSK1BQ9BXA7 367 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 GCOM2Q9BZD3 368 aaPredicted RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 FAM49BQ9NUQ9 324 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 XPO7Q9UIA9 1087 aaKnown RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 ZNF200P98182 395 aaPredicted RBP7.56□□□□□ -1.2
VCAN-202ENST00000342785 STILQ15468 1287 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 ECM1Q16610 540 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 EFHC2Q5JST6 749 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 KCNT1Q5JUK3 1230 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 PCNX4Q63HM2 1172 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 JADE1Q6IE81 842 aa7.56□□□□□ -1.2
VCAN-202ENST00000342785 NOP9Q86U38 636 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms