RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 LMO3Q8TAP4 145 aa23.84■■□□□ 1.41
SDC3-202ENST00000339394 GPR62Q9BZJ7 368 aa23.84■■□□□ 1.41
SDC3-202ENST00000339394 VRTNQ9H8Y1 702 aa23.84■■□□□ 1.41
SDC3-202ENST00000339394 SZT2Q5T011 3432 aa23.84■■□□□ 1.41
SDC3-202ENST00000339394 GTPBP10A4D1E9 387 aaKnown RBP23.83■■□□□ 1.41
SDC3-202ENST00000339394 LGALS16A8MUM7 142 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 I3L4J1 428 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 EFEMP2O95967 443 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 PLCB3Q01970 1234 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 ZNF699Q32M78 642 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 WDR72Q3MJ13 1102 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 SV2CQ496J9 727 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 FUT10Q6P4F1 479 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 IMPG2Q9BZV3 1241 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 GCNT4Q9P109 453 aa23.83■■□□□ 1.41
SDC3-202ENST00000339394 SF3B1O75533 1304 aaKnown RBP eCLIP23.83■■□□□ 1.413e-6■■■■■ 94.8
SDC3-202ENST00000339394 TRAPPC3O43617 180 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 PAX3P23760 479 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 KRT17Q04695 432 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 EXOC3L4Q17RC7 722 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 FILIP1LQ4L180 1135 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 FKBP15Q5T1M5 1219 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 SPOPLQ6IQ16 392 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 GBP6Q6ZN66 633 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 EHBP1Q8NDI1 1231 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 ARNTL2Q8WYA1 636 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 TAF4BQ92750 862 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 C11orf84Q9BUA3 381 aaPredicted RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 VN1R3Q9BXE9 311 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 APOBEC3GQ9HC16 384 aaKnown RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 ALG13Q9NP73 1137 aaKnown RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 RTN4Q9NQC3 1192 aaKnown RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 GDAP2Q9NXN4 497 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 SNX9Q9Y5X1 595 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 A0A1B0GTH6 734 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 SOX1O00570 391 aaPredicted RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 CLSTN1O94985 981 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 UBASH3AP57075 661 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 NOP14P78316 857 aaKnown RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 UBXN1Q04323 297 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 WDR44Q5JSH3 913 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 DSTYKQ6XUX3 929 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 TAS1R1Q7RTX1 841 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 DDX53Q86TM3 631 aaKnown RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 CCDC150Q8NCX0 1101 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 FBXO22Q8NEZ5 403 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 SUSD3Q96L08 255 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 SENP8Q96LD8 212 aa23.82■■□□□ 1.4
SDC3-202ENST00000339394 NXF1Q9UBU9 619 aaKnown RBP23.82■■□□□ 1.4
SDC3-202ENST00000339394 M0QZQ0 153 aa23.81■■□□□ 1.4
SDC3-202ENST00000339394 TEX33O43247 280 aa23.81■■□□□ 1.4
SDC3-202ENST00000339394 SLC9A1P19634 815 aa23.81■■□□□ 1.4
SDC3-202ENST00000339394 NR1I3Q14994 352 aa23.81■■□□□ 1.4
SDC3-202ENST00000339394 FAM171A1Q5VUB5 890 aa23.81■■□□□ 1.4
SDC3-202ENST00000339394 RNF168Q8IYW5 571 aaPredicted RBP23.81■■□□□ 1.4
SDC3-202ENST00000339394 CYB561D2O14569 222 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 PON1P27169 355 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 KCNMA1Q12791 1236 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 ELAVL2Q12926 359 aaKnown RBP23.8■■□□□ 1.4
SDC3-202ENST00000339394 ZNF667Q5HYK9 610 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 SPPL3Q8TCT6 385 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 INTS2Q9H0H0 1204 aaKnown RBP23.8■■□□□ 1.4
SDC3-202ENST00000339394 ZNF576Q9H609 170 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 IFNKQ9P0W0 207 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 GBF1Q92538 1859 aa23.8■■□□□ 1.4
SDC3-202ENST00000339394 H3BNC9 293 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 SOD2P04179 222 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 TNNC1P63316 161 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 LRMPQ12912 555 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 TRIM65Q6PJ69 517 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 TATDN2Q93075 761 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 B3GALT6Q96L58 329 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 MMS19Q96T76 1030 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 PUF60Q9UHX1 559 aaKnown RBP23.79■■□□□ 1.4
SDC3-202ENST00000339394 POLIQ9UNA4 740 aa23.79■■□□□ 1.4
SDC3-202ENST00000339394 EPOPA6NHQ4 379 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 PLCB2Q00722 1185 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 GPM6BQ13491 265 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 SOWAHAQ2M3V2 549 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 VPS52Q8N1B4 723 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 POF1BQ8WVV4 589 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 LRCH3Q96II8 777 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 CHST7Q9NS84 486 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 STK39Q9UEW8 545 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 LZTS1Q9Y250 596 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 TIMM13Q9Y5L4 95 aaPredicted RBP23.78■■□□□ 1.4
SDC3-202ENST00000339394 GRM6O15303 877 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 HUS1O60921 280 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 ODC1P11926 461 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 P4HA1P13674 534 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 TKTP29401 623 aaKnown RBP23.78■■□□□ 1.4
SDC3-202ENST00000339394 APBA1Q02410 837 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 UBE3AQ05086 875 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 USP41Q3LFD5 358 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 LIMS2Q7Z4I7 341 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 CEP57Q86XR8 500 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 ERGIC2Q96RQ1 377 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 PCDHB8Q9UN66 801 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 L1RE1Q9UN81 338 aa23.78■■□□□ 1.4
SDC3-202ENST00000339394 TMEM265A0A087WTH1 108 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms