RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 WDR72Q3MJ13 1102 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 FAM26DQ5JW98 314 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 LRRC57Q8N9N7 239 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 TPCN2Q8NHX9 752 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CARD6Q9BX69 1037 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 FAM124BQ9H5Z6 455 aaPredicted RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 TRMT13Q9NUP7 481 aaKnown RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 POLIQ9UNA4 740 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 AGAP1Q9UPQ3 857 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CAND2O75155 1236 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 CALCAP01258 141 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 CYP1A1P04798 512 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-202ENST00000338045 WEE2P0C1S8 567 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 ABCB4P21439 1286 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 AKAP5P24588 427 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 THPOP40225 353 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 HADHBP55084 474 aaKnown RBP16.53■□□□□ 0.24
LIMS1-202ENST00000338045 WHAMMP3Q1A5X7 153 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 TWF2Q6IBS0 349 aaKnown RBP16.53■□□□□ 0.24
LIMS1-202ENST00000338045 ACAD10Q6JQN1 1059 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 TRIM72Q6ZMU5 477 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 ARRDC4Q8NCT1 418 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 LRRN4CLQ8ND94 238 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 ARHGEF26Q96DR7 871 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 HPDLQ96IR7 371 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 RNF39Q9H2S5 420 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 CYP3A43Q9HB55 503 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 NXF1Q9UBU9 619 aaKnown RBP16.53■□□□□ 0.24
LIMS1-202ENST00000338045 SNX12Q9UMY4 172 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 TRIP11Q15643 1979 aa16.53■□□□□ 0.24
LIMS1-202ENST00000338045 A0A1W2PQ45 241 aaPredicted RBP16.52■□□□□ 0.24
LIMS1-202ENST00000338045 A0A1W2PQY0 241 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 DYNC1I1O14576 645 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 GPR182O15218 404 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 NOP2P46087 812 aaKnown RBP16.52■□□□□ 0.24
LIMS1-202ENST00000338045 GPC5P78333 572 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 FBXO47Q5MNV8 452 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 SLFN11Q7Z7L1 901 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 RHOT2Q8IXI1 618 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 BEST2Q8NFU1 509 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 SLC35G2Q8TBE7 412 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 CALR3Q96L12 384 aaKnown RBP16.52■□□□□ 0.24
LIMS1-202ENST00000338045 TLR10Q9BXR5 811 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.52■□□□□ 0.24
LIMS1-202ENST00000338045 SDCBP2Q9H190 292 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 AGO3Q9H9G7 860 aaKnown RBP16.52■□□□□ 0.24
LIMS1-202ENST00000338045 ERVK-5Q9HDB9 667 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 TSKSQ9UJT2 592 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 UBQLN1Q9UMX0 589 aaKnown RBP16.52■□□□□ 0.24
LIMS1-202ENST00000338045 BRCA2P51587 3418 aa16.52■□□□□ 0.24
LIMS1-202ENST00000338045 P4HA1P13674 534 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 CD58P19256 250 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 SCARA5Q6ZMJ2 495 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 LRRC52Q8N7C0 313 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF606Q8WXB4 792 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 APOL6Q9BWW8 343 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 PHF24Q9UPV7 400 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 SQORQ9Y6N5 450 aa16.52■□□□□ 0.23
LIMS1-202ENST00000338045 PDCD11Q14690 1871 aaKnown RBP16.52■□□□□ 0.23
LIMS1-202ENST00000338045 SMIM28A0A1B0GU29 152 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 TADA3O75528 432 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 CENPCQ03188 943 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 NFX1Q12986 1120 aaKnown RBP16.51■□□□□ 0.23
LIMS1-202ENST00000338045 MEI1Q5TIA1 1274 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 MNS1Q8NEH6 495 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 SH3TC2Q8TF17 1288 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 TRAIPQ9BWF2 469 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 OSBPL7Q9BZF2 842 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 OSGEPQ9NPF4 335 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 FAM105AQ9NUU6 356 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 TUBGCP4Q9UGJ1 667 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 PARP2Q9UGN5 583 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 GTF3C4Q9UKN8 822 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 NOD1Q9Y239 953 aa16.51■□□□□ 0.23
LIMS1-202ENST00000338045 THAP12O43422 761 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 MTA2O94776 668 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CYP1A2P05177 515 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 TCP1P17987 556 aaKnown RBP16.5■□□□□ 0.23
LIMS1-202ENST00000338045 NOMO3P69849 1222 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 GLRA4Q5JXX5 417 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CEP112Q8N8E3 955 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 C18orf25Q96B23 403 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-202ENST00000338045 SMYD3Q9H7B4 428 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 STARD7Q9NQZ5 370 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 PADI3Q9ULW8 664 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 COG5Q9UP83 839 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 PTPN22Q9Y2R2 807 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 HYOU1Q9Y4L1 999 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 EFCAB8A8MWE9 144 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 XPOTO43592 962 aaKnown RBP16.5■□□□□ 0.23
LIMS1-202ENST00000338045 FTCDO95954 541 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CD4P01730 458 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 TFRCP02786 760 aaKnown RBP16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CFHP08603 1231 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 PAEPP09466 180 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CYP3A5P20815 502 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 RAP1GAPP47736 663 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CDH8P55286 799 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 INCA1Q0VD86 236 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 MYO1EQ12965 1108 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms