RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 MRPL42Q9Y6G3 142 aaKnown RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 CAV1Q03135 178 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 TAP1Q03518 808 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 CCDC92Q53HC0 331 aaPredicted RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 C9orf72Q96LT7 481 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 NT5C1AQ9BXI3 368 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 RRAGCQ9HB90 399 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.7□□□□□ -0.7
CHD3-201ENST00000330494 SUFUQ9UMX1 484 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 KPNA7A9QM74 516 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 GRIN3BO60391 1043 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 NCAM1P13591 858 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 LY6KQ17RY6 165 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 ITPRIPL1Q6GPH6 555 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 DDX42Q86XP3 938 aaKnown RBP eCLIP10.7□□□□□ -0.7
CHD3-201ENST00000330494 ZBTB18Q99592 522 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 EFHD1Q9BUP0 239 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 TIPINQ9BVW5 301 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 TRPV6Q9H1D0 765 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 SYNDIG1Q9H7V2 258 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 BFARQ9NZS9 450 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 IGSF9BQ9UPX0 1349 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 USP32Q8NFA0 1604 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 EEF2KO00418 725 aaKnown RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 TBX3O15119 743 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 SLC25A27O95847 323 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 ATN1P54259 1190 aaPredicted RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 KYAT1Q16773 422 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 RCOR2Q8IZ40 523 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 TC2NQ8N9U0 490 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 SPIRE2Q8WWL2 714 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 OPTNQ96CV9 577 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 SERPINI1Q99574 410 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 TMEM8AQ9HCN3 771 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 RBM12Q9NTZ6 932 aaKnown RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 SGPL1O95470 568 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 EPHX2P34913 555 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 TOB1P50616 345 aaPredicted RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 SCFD2Q8WU76 684 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 ZDHHC15Q96MV8 337 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 CASS4Q9NQ75 786 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 HBP1O60381 514 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 DCTN3O75935 186 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 CPT1AP50416 773 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 KRT80Q6KB66 452 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 ATPAF2Q8N5M1 289 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 TRAPPC3O43617 180 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 DNAJC8O75937 253 aaPredicted RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 ZFXP17010 805 aaPredicted RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 AGBL3Q8NEM8 1001 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 CHST13Q8NET6 341 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 DPP3Q9NY33 737 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 TMEM150BA6NC51 233 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 VCAM1P19320 739 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 NFKBIAP25963 317 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 ATXN3P54252 364 aaPredicted RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 ALDH18A1P54886 795 aaKnown RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 CSE1LP55060 971 aaKnown RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 CDR2Q01850 454 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 TADA2BQ86TJ2 420 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 RIN2Q8WYP3 895 aaPredicted RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 ELMO2Q96JJ3 720 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 MARCOQ9UEW3 520 aaPredicted RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 CHMP2BQ9UQN3 213 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 TCP11X1B4DZS4 312 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 FAXCQ5TGI0 409 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 PGBD3Q8N328 593 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 C1orf131Q8NDD1 294 aaKnown RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 PPHLN1Q8NEY8 458 aaKnown RBP10.69□□□□□ -0.7
CHD3-201ENST00000330494 AGPAT3Q9NRZ7 376 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 AIPL1Q9NZN9 384 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 NAGPAQ9UK23 515 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 DEPDC5O75140 1603 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 MAGEB2O15479 319 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 TLR2O60603 784 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 E2F6O75461 281 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 RFC5P40937 340 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 PPP4CP60510 307 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 C1orf146Q5VVC0 180 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 C4orf33Q8N1A6 199 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 ATL2Q8NHH9 583 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 CENPKQ9BS16 269 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 ECT2Q9H8V3 914 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 COG4Q9H9E3 785 aa10.69□□□□□ -0.7
CHD3-201ENST00000330494 ARHGEF28Q8N1W1 1705 aaKnown RBP10.68□□□□□ -0.7
CHD3-201ENST00000330494 FAM205AQ6ZU69 1335 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 C17orf102A2RUQ5 167 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 GMNCA6NCL1 334 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 FAM187AA6NFU0 413 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 KIF1CO43896 1103 aaKnown RBP10.68□□□□□ -0.7
CHD3-201ENST00000330494 TWF1Q12792 350 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 SV2CQ496J9 727 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 NOTUMQ6P988 496 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 SPATA18Q8TC71 538 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 MAP3K14Q99558 947 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 CYP11B2P19099 503 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 BACE1P56817 501 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 TNS2Q63HR2 1409 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 GLB1LQ6UWU2 654 aa10.68□□□□□ -0.7
CHD3-201ENST00000330494 CBWD2Q8IUF1 395 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms