RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZNF296Q8WUU4 475 aaPredicted RBP19.7■□□□□ 0.74
USP39-201ENST00000323701 C18orf25Q96B23 403 aaPredicted RBP19.7■□□□□ 0.74
USP39-201ENST00000323701 SNX27Q96L92 541 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 CCDC94Q9BW85 323 aaPredicted RBP19.7■□□□□ 0.74
USP39-201ENST00000323701 SMYD3Q9H7B4 428 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 DPP3Q9NY33 737 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 KLK14Q9P0G3 267 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 TUBGCP4Q9UGJ1 667 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 DDX20Q9UHI6 824 aaKnown RBP19.7■□□□□ 0.74
USP39-201ENST00000323701 TSKSQ9UJT2 592 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 AGAP1Q9UPQ3 857 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 C2CD2Q9Y426 696 aa19.7■□□□□ 0.74
USP39-201ENST00000323701 KYAT1Q16773 422 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 ALKAL1Q6UXT8 129 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 PHLDB2Q86SQ0 1253 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 CEP112Q8N8E3 955 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 ARRDC4Q8NCT1 418 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 UBXN4Q92575 508 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 HMGXB4Q9UGU5 601 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 SCN1AP35498 2009 aa19.69■□□□□ 0.74
USP39-201ENST00000323701 YY1P25490 414 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 CST5P28325 142 aaPredicted RBP19.68■□□□□ 0.74
USP39-201ENST00000323701 NAA35Q5VZE5 725 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 ACAD10Q6JQN1 1059 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 DAAM2Q86T65 1068 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 CPNE8Q86YQ8 564 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 TFAP2BQ92481 460 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 STXBP5LQ9Y2K9 1186 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 CYP1A1P04798 512 aaPredicted RBP19.68■□□□□ 0.74
USP39-201ENST00000323701 PRLRP16471 622 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 BRD2P25440 801 aaKnown RBP19.68■□□□□ 0.74
USP39-201ENST00000323701 GPC5P78333 572 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 PCBP1Q15365 356 aaKnown RBP eCLIP19.68■□□□□ 0.74
USP39-201ENST00000323701 SMG8Q8ND04 991 aaKnown RBP19.68■□□□□ 0.74
USP39-201ENST00000323701 ZNF606Q8WXB4 792 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 BTBD6Q96KE9 485 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 TWNKQ96RR1 684 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 BCO2Q9BYV7 579 aa19.68■□□□□ 0.74
USP39-201ENST00000323701 TRIM6Q9C030 488 aaPredicted RBP19.68■□□□□ 0.74
USP39-201ENST00000323701 TRMT13Q9NUP7 481 aaKnown RBP19.68■□□□□ 0.74
USP39-201ENST00000323701 MEIS3P2A8K0S8 358 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 THAP12O43422 761 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 INHAP05111 366 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 HOXD10P28358 340 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 BPIFB4P59827 614 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 ZBTB6Q15916 424 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 ZNF667Q5HYK9 610 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 NT5DC3Q86UY8 548 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 WHAMMQ8TF30 809 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 HPDLQ96IR7 371 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 SENP6Q9GZR1 1112 aaPredicted RBP19.67■□□□□ 0.74
USP39-201ENST00000323701 ABCB6Q9NP58 842 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 CTTNBP2NLQ9P2B4 639 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 CTAGE15A4D2H0 777 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 CTAGE8P0CG41 777 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 AXLP30530 894 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 LHX8Q68G74 356 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 CTAGE6Q86UF2 777 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 ZNF677Q86XU0 584 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 CTAGE4Q8IX94 777 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 AGO3Q9H9G7 860 aaKnown RBP19.67■□□□□ 0.74
USP39-201ENST00000323701 ST3GAL5Q9UNP4 418 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 IPPQ9Y573 584 aa19.67■□□□□ 0.74
USP39-201ENST00000323701 MGAT3Q09327 533 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 PTGISQ16647 500 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 PXYLP1Q8TE99 480 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 GOLGA1Q92805 767 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 ZNF653Q96CK0 615 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 TRIM7Q9C029 511 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 TRPV2Q9Y5S1 764 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 KIF4AO95239 1232 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 CYP1A2P05177 515 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 TCP1P17987 556 aaKnown RBP19.66■□□□□ 0.74
USP39-201ENST00000323701 ACLYP53396 1101 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 NOMO3P69849 1222 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 SESTD1Q86VW0 696 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 MCOLN2Q8IZK6 566 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 PDCL2Q8N4E4 241 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 TAF4BQ92750 862 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 PLEKHA5Q9HAU0 1116 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 CNTN3Q9P232 1028 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 ITGA11Q9UKX5 1188 aa19.66■□□□□ 0.74
USP39-201ENST00000323701 RALGAPA2Q2PPJ7 1873 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 THPOP40225 353 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 CENPCQ03188 943 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 NFX1Q12986 1120 aaKnown RBP19.65■□□□□ 0.74
USP39-201ENST00000323701 IFI16Q16666 785 aaKnown RBP19.65■□□□□ 0.74
USP39-201ENST00000323701 FBXO38Q6PIJ6 1188 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 PEX26Q7Z412 305 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 NUP85Q9BW27 656 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 VRTNQ9H8Y1 702 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 ANKZF1Q9H8Y5 726 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 PRDM4Q9UKN5 801 aa19.65■□□□□ 0.74
USP39-201ENST00000323701 SMIM28A0A1B0GU29 152 aa19.64■□□□□ 0.74
USP39-201ENST00000323701 RRM1P23921 792 aa19.64■□□□□ 0.74
USP39-201ENST00000323701 YARSP54577 528 aaKnown RBP19.64■□□□□ 0.74
USP39-201ENST00000323701 RAD23BP54727 409 aa19.64■□□□□ 0.74
USP39-201ENST00000323701 RNASE9P60153 205 aaKnown RBP19.64■□□□□ 0.74
USP39-201ENST00000323701 SOX4Q06945 474 aaPredicted RBP19.64■□□□□ 0.74
USP39-201ENST00000323701 C2orf54Q08AI8 447 aa19.64■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms