RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 NSL1Q96IY1 281 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 UNC45AQ9H3U1 944 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 GPRC5CQ9NQ84 441 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 DDX4Q9NQI0 724 aaKnown RBP12.16□□□□□ -0.46
VPS33A-201ENST00000267199 DGAT1O75907 488 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 SLC1A1P43005 524 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 OCRLQ01968 901 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 ITKQ08881 620 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 TAF1BQ53T94 588 aaPredicted RBP12.16□□□□□ -0.46
VPS33A-201ENST00000267199 PDZD4Q76G19 769 aaPredicted RBP12.16□□□□□ -0.46
VPS33A-201ENST00000267199 GALNT4Q8N4A0 578 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 PSPC1Q8WXF1 523 aaKnown RBP12.16□□□□□ -0.46
VPS33A-201ENST00000267199 RPAP3Q9H6T3 665 aaPredicted RBP12.16□□□□□ -0.46
VPS33A-201ENST00000267199 SLC38A10Q9HBR0 1119 aa12.16□□□□□ -0.46
VPS33A-201ENST00000267199 WARS2Q9UGM6 360 aaKnown RBP12.16□□□□□ -0.46
VPS33A-201ENST00000267199 E2F8A0AVK6 867 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 PJA2O43164 708 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 ADCY3O60266 1144 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 SHBGP04278 402 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 IL1R1P14778 569 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 ARL4AP40617 200 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 LAMB3Q13751 1172 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 TFDP2Q14188 446 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 COG2Q14746 738 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 QPCTQ16769 361 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 C1orf228Q6PIY5 440 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 LRRC55Q6ZSA7 311 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 ATP8B4Q8TF62 1192 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 UPF3AQ9H1J1 476 aaKnown RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 JPH1Q9HDC5 661 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 PARVAQ9NVD7 372 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 CAMTA1Q9Y6Y1 1673 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 FAM208AQ9UK61 1670 aaKnown RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 RNF103-CHMP3A0A140T963 221 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 HNRNPCL1O60812 293 aaKnown RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 CBX6O95503 412 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 FSCBQ5H9T9 825 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 KCTD17Q8N5Z5 321 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 SLC35C1Q96A29 364 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 STRIP2Q9ULQ0 834 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 ASAP2O43150 1006 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 SEC24DO94855 1032 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 NR3C2P08235 984 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 MCF2P10911 925 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 EPHB2P29323 1055 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 PRAMEP78395 509 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 PDCD2Q16342 344 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 ZNF720Q7Z2F6 126 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 YTHDF3Q7Z739 585 aaKnown RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 CBWD2Q8IUF1 395 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 DRC3Q9H069 523 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 RXFP1Q9HBX9 757 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 ZNF70Q9UC06 446 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-201ENST00000267199 GTF3C4Q9UKN8 822 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 PCDHB2Q9Y5E7 798 aa12.15□□□□□ -0.46
VPS33A-201ENST00000267199 NEMP1O14524 444 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 SGPL1O95470 568 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 KRT7P08729 469 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 GABPAQ06546 454 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 SLC20A1Q8WUM9 679 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 FAM151AQ8WW52 585 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 PRMT6Q96LA8 375 aaPredicted RBP12.15□□□□□ -0.47
VPS33A-201ENST00000267199 FAM111AQ96PZ2 611 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 TMEM39BQ9GZU3 492 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 DCLRE1BQ9H816 532 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 MANSC1Q9H8J5 431 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 TMEM8AQ9HCN3 771 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 NOD1Q9Y239 953 aa12.15□□□□□ -0.47
VPS33A-201ENST00000267199 P4HA2O15460 535 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 PTENP60484 403 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 MTMR2Q13614 643 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 PRPF39Q86UA1 669 aaKnown RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 C4orf32Q8N8J7 132 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 PCMTD2Q9NV79 361 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 FAM86B1E9PN63 330 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 HLA-DRAP01903 254 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 FAM86B2P0C5J1 330 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 TYK2P29597 1187 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 RPL21P46778 160 aaKnown RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 HMGCS2P54868 508 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 PTK7Q13308 1070 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 DUOXA2Q1HG44 320 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 RARS2Q5T160 578 aaKnown RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 EXT2Q93063 718 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 DCPSQ96C86 337 aaKnown RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 TIPINQ9BVW5 301 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 DDX3XO00571 662 aaKnown RBP eCLIP12.14□□□□□ -0.476e-17■■■□□ 18.4
VPS33A-201ENST00000267199 ATP9AO75110 1047 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 APRTP07741 180 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 ACADSP16219 412 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 ACCSLQ4AC99 568 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 ZCWPW2Q504Y3 356 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 RYBPQ8N488 228 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 RBBP8NLQ8NC74 664 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 PIK3R5Q8WYR1 880 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 MAGEB18Q96M61 343 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 MMTAG2Q9BU76 263 aaKnown RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 HOXC10Q9NYD6 342 aa12.14□□□□□ -0.47
VPS33A-201ENST00000267199 RGPD8O14715 1765 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-201ENST00000267199 MAGEA13PA6NCF6 341 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms