RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DUOXA2Q1HG44 320 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 NFRKBQ6P4R8 1299 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 FBXO40Q9UH90 709 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 PDZK1P1A8MUH7 402 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 AP3B1O00203 1094 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 EIF3DO15371 548 aaKnown RBP eCLIP11.9□□□□□ -0.5
PTPN4-201ENST00000263708 TMEM179Q6ZVK1 233 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 VSTM4Q8IW00 320 aa11.9□□□□□ -0.5
PTPN4-201ENST00000263708 PUS3Q9BZE2 481 aaKnown RBP11.9□□□□□ -0.5
PTPN4-201ENST00000263708 RGS12O14924 1447 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 USP17L5A8MUK1 530 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 PCNAP12004 261 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 HARS2P49590 506 aaKnown RBP11.9□□□□□ -0.51
PTPN4-201ENST00000263708 LAYNQ6UX15 382 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 MMGT1Q8N4V1 131 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 WWOXQ9NZC7 414 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 POLG2Q9UHN1 485 aa11.9□□□□□ -0.51
PTPN4-201ENST00000263708 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 BBOX1O75936 387 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 DDI2Q5TDH0 399 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 NLRP10Q86W26 655 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 UNC45BQ8IWX7 931 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 PSMC3P17980 439 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 SLAIN2Q9P270 581 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 POLR1DQ9Y2S0 133 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 STAT3P40763 770 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 PKP1Q13835 747 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 MACC1Q6ZN28 852 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 SERHL2Q9H4I8 314 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 NMRK2Q9NPI5 230 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 SERHLQ9NQF3 203 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 NCK2O43639 380 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 PDGFRBP09619 1106 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 MAGEA9P43362 315 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 KCNH2Q12809 1159 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 CAMK2GQ13555 558 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 DRAP1Q14919 205 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 FAM182BQ5T319 152 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 NSUN6Q8TEA1 469 aaKnown RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 SNTNA6NMZ2 147 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 HSPA9P38646 679 aaKnown RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 EAF2Q96CJ1 260 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 PADI4Q9UM07 663 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 USP1O94782 785 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 RGS7P49802 495 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 TMEM62Q0P6H9 643 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF772Q68DY9 489 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 IPMKQ8NFU5 416 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 EEF2KO00418 725 aaKnown RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ALBP02768 609 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 NOS3P29474 1203 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 MAPKAPK2P49137 400 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 MTFR1Q15390 333 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 MAGED4Q96JG8 741 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ZMYND8Q9ULU4 1186 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 SNX8Q9Y5X2 465 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 FAM25AB3EWG3 89 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 FAM25CB3EWG5 89 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 FAM25GB3EWG6 89 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ZBTB39O15060 712 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ZNF500O60304 480 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 SH3RF3Q8TEJ3 882 aaPredicted RBP11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ENTPD7Q9NQZ7 604 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 ATP6V1HQ9UI12 483 aa11.89□□□□□ -0.51
PTPN4-201ENST00000263708 LRG1P02750 347 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 KPNA1P52294 538 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 KYAT1Q16773 422 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 P3H1Q32P28 736 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 NLRP14Q86W24 1093 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 TTC39CQ8N584 583 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 CRLS1Q9UJA2 301 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 VCLP18206 1134 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 COASYQ13057 564 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 CDH18Q13634 790 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM72Q6ZMU5 477 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 TRABDQ9H4I3 376 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 SENP2Q9HC62 589 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ACADMP11310 421 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 WDR36Q8NI36 951 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 OSBPL9Q96SU4 736 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 CINPQ9BW66 212 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ERAP1Q9NZ08 941 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 PLXNC1O60486 1568 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 SMIM31A0A1B0GVY4 71 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 RPN2P04844 631 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 KCNA3P22001 575 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 DDX39BQ13838 428 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 ARMCX4Q5H9R4 360 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 FAM45BPQ6NSW5 357 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 IZUMO1Q8IYV9 350 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 GPD1LQ8N335 351 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 SLC7A14Q8TBB6 771 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 AGO2Q9UKV8 859 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 TRIM49BA6NDI0 452 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 PRPF3O43395 683 aaKnown RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 PTPN7P35236 360 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 CFAP73A6NFT4 308 aa11.88□□□□□ -0.51
PTPN4-201ENST00000263708 SH2B2O14492 632 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-201ENST00000263708 MFAP3LO75121 409 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms