RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 KIF12Q96FN5 646 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DYDC2Q96IM9 177 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TMEM237Q96Q45 408 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PITPNM3Q9BZ71 974 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PDE11AQ9HCR9 933 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 NXF1Q9UBU9 619 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ATP8A1Q9Y2Q0 1164 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 L3MBTL1Q9Y468 752 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ESRRAP11474 423 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SPP2Q13103 211 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ATPAF2Q8N5M1 289 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ADAMTS1Q9UHI8 967 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 MTO1Q9Y2Z2 717 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 LRRC53A6NM62 1247 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 NMT2O60551 498 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 LRRN2O75325 713 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 POLBP06746 335 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 FGFR2P21802 821 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PSMA4P25789 261 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SLC16A2P36021 539 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 KRR1Q13601 381 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 CTTNQ14247 550 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 CC2D1AQ6P1N0 951 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TATDN1Q6P1N9 297 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 HERC6Q8IVU3 1022 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DHX40Q8IX18 779 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TEX9Q8N6V9 391 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PDCD7Q8N8D1 485 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ARL8AQ96BM9 186 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 FTHL17Q9BXU8 183 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PRKD2Q9BZL6 878 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TSPYL2Q9H2G4 693 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SAMSN1Q9NSI8 373 aaKnown RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 COL1A1P02452 1464 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 EMSYQ7Z589 1322 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 FAM237AA0A1B0GTK4 181 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 hCG_1642624A0A1W2PR95 340 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TIMM44O43615 452 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 VDRP11473 427 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 MAP2K2P36507 400 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PIK3CGP48736 1102 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PPATQ06203 517 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SDE2Q6IQ49 451 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SWSAP1Q6NVH7 229 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ANO5Q75V66 913 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DESI2Q9BSY9 194 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 KBTBD4Q9NVX7 518 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PLAGL2Q9UPG8 496 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 C17orf102A2RUQ5 167 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 HSPA4LO95757 839 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 FTLP02792 175 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TAF6P49848 677 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SLC15A2Q16348 729 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PPP1R15BQ5SWA1 713 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 LRRC8EQ6NSJ5 796 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 MICALL2Q8IY33 904 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 SHCBP1Q8NEM2 672 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 COG1Q8WTW3 980 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 MS4A14Q96JA4 679 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DCLK3Q9C098 648 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 BATF3Q9NR55 127 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 GID8Q9NWU2 228 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 ANKRD6Q9Y2G4 727 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 RIC1Q4ADV7 1423 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 A0A1B0GW55 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 C16orf96A6NNT2 1141 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 TOM1L1O75674 476 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4L2P0CJ85 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4L3P0CJ86 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4L4P0CJ87 422 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4L5P0CJ88 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4L6P0CJ89 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4L7P0CJ90 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 UNC45BQ8IWX7 931 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 GPC2Q8N158 579 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 LBHD1Q9BQE6 289 aaPredicted RBP4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DUX4Q9UBX2 424 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 PCDHGB4Q9UN71 923 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 DERAQ9Y315 318 aa4.53□□□□□ -1.68
VPS13C-202ENST00000261517 GAKO14976 1311 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 GMNCA6NCL1 334 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 SLC11A2P49281 568 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 METTL7BQ6UX53 244 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 YAF2Q8IY57 180 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 CYFIP2Q96F07 1278 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 PRPF18Q99633 342 aaKnown RBP4.52□□□□□ -1.69
VPS13C-202ENST00000261517 TDRD3Q9H7E2 651 aaKnown RBP4.52□□□□□ -1.69
VPS13C-202ENST00000261517 LRP6O75581 1613 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 UMODL1Q5DID0 1318 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 E5RI56 91 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 UCHL3P15374 230 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 IL10P22301 178 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 PRAMEP78395 509 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 GCNT1Q02742 428 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 KRT33BQ14525 404 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 EZH2Q15910 746 aaKnown RBP4.52□□□□□ -1.69
VPS13C-202ENST00000261517 TXNRD3Q86VQ6 643 aa4.52□□□□□ -1.69
VPS13C-202ENST00000261517 COL23A1Q86Y22 540 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-202ENST00000261517 RNF168Q8IYW5 571 aaPredicted RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms