RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FGF19O95750 216 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 URODP06132 367 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 C1QBPQ07021 282 aaKnown RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 ZC2HC1CQ53FD0 456 aaPredicted RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 HEATR6Q6AI08 1181 aaKnown RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 VPS39Q96JC1 886 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 GIT1Q9Y2X7 761 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 RTN3O95197 1032 aaPredicted RBP14.42□□□□□ -0.1
LDLR-201ENST00000252444 SULT1E1P49888 294 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 TRIM65Q6PJ69 517 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 CEP57Q86XR8 500 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 TUBB6Q9BUF5 446 aa14.42□□□□□ -0.1
LDLR-201ENST00000252444 MSH2P43246 934 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 CTAGE3PQ8IX95 158 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 FMO2Q99518 471 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 INTS13Q9NVM9 706 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 RSPH10B2B2RC85 870 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 FTCDO95954 541 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 RSPH10BP0C881 870 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 ZNF18P17022 549 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 BCAR1P56945 870 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 YWHAGP61981 247 aaKnown RBP eCLIP14.41□□□□□ -0.1
LDLR-201ENST00000252444 IL9RQ01113 521 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 GFPT1Q06210 699 aaPredicted RBP14.41□□□□□ -0.1
LDLR-201ENST00000252444 PTGISQ16647 500 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 KLC3Q6P597 504 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.41□□□□□ -0.13e-6■□□□□ 10.6
LDLR-201ENST00000252444 FBXO44Q9H4M3 255 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 BLOC1S4Q9NUP1 217 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 LRP5O75197 1615 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 TEX33O43247 280 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 COBLO75128 1261 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 CIB2O75838 187 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 CTSHP09668 335 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 LY6KQ17RY6 165 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 SNED1Q8TER0 1413 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 FGGP02679 453 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 MTHFD1LQ6UB35 978 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 FEZF2Q8TBJ5 459 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 SNF8Q96H20 258 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 OSBPL9Q96SU4 736 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 TBCBQ99426 244 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 HSD17B14Q9BPX1 270 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 TRIM56Q9BRZ2 755 aaKnown RBP14.41□□□□□ -0.1
LDLR-201ENST00000252444 EMILIN2Q9BXX0 1053 aa14.41□□□□□ -0.1
LDLR-201ENST00000252444 BTBD19C9JJ37 291 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 PON1P27169 355 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 PDK1Q15118 436 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 USP49Q70CQ1 688 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 KIF9Q9HAQ2 790 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 SP110Q9HB58 689 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 RPTORQ8N122 1335 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 TIAM2Q8IVF5 1701 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 STX2P32856 288 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 CLCN3P51790 818 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 MARSP56192 900 aaKnown RBP14.4□□□□□ -0.1
LDLR-201ENST00000252444 MXRA7P84157 204 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 BST2Q10589 180 aaKnown RBP14.4□□□□□ -0.1
LDLR-201ENST00000252444 BIRC2Q13490 618 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 GOLGA7BQ2TAP0 167 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 SH3BP5LQ7L8J4 393 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 GLYCTKQ8IVS8 523 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 ATL2Q8NHH9 583 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 MORF4L1Q9UBU8 362 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 BARX2Q9UMQ3 279 aaPredicted RBP14.4□□□□□ -0.1
LDLR-201ENST00000252444 PPM1AP35813 382 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 EPHB1P54762 984 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 AMPD2Q01433 879 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 MAP3K21Q5TCX8 1036 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 ADGRF2Q8IZF7 708 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 SPATA18Q8TC71 538 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 HSPH1Q92598 858 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.4□□□□□ -0.19e-7■■■□□ 17.2
LDLR-201ENST00000252444 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.4□□□□□ -0.14e-7■■□□□ 11.6
LDLR-201ENST00000252444 TTLL3Q9Y4R7 772 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 HMGB1P1B2RPK0 211 aaPredicted RBP14.4□□□□□ -0.1
LDLR-201ENST00000252444 TPI1P60174 286 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 FBXO47Q5MNV8 452 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 CCDC62Q6P9F0 684 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 TRIM17Q9Y577 477 aa14.4□□□□□ -0.1
LDLR-201ENST00000252444 SYNJ2BP-COX16A0A087WUM0 186 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 TRIM66O15016 1216 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 KRT37O76014 449 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 LRG1P02750 347 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 ITGB3P05106 788 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 DNAAF3Q8N9W5 541 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 FBF1Q8TES7 1133 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 AVENQ9NQS1 362 aaPredicted RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 AIPL1Q9NZN9 384 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 COX16Q9P0S2 106 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 SENP1Q9P0U3 644 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 FHOD1Q9Y613 1164 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 SMIM10L2AP0DMW4 78 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 SMIM10L2BP0DMW5 78 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 CYP2C18P33260 490 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 GEMIN4P57678 1058 aaKnown RBP14.39□□□□□ -0.11
LDLR-201ENST00000252444 C11orf63Q6NUN7 778 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 ABHD15Q6UXT9 468 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 HAS1Q92839 578 aa14.39□□□□□ -0.11
LDLR-201ENST00000252444 IFT43Q96FT9 208 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms