RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ENC1O14682 589 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 ZC3H11AO75152 810 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP40-201ENST00000251722 LRG1P02750 347 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 PTPROQ16827 1216 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 PREPLQ4J6C6 727 aaPredicted RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 KCTD16Q68DU8 428 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 ATG4CQ96DT6 458 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 DHX35Q9H5Z1 703 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 CYP11B2P19099 503 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 PAX3P23760 479 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 CDR2Q01850 454 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 SNRNP35Q16560 246 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 WDR72Q3MJ13 1102 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 TDRD10Q5VZ19 366 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 EEF2KMTQ96G04 330 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 SENP7Q9BQF6 1050 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 NIF3L1Q9GZT8 377 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 EML4Q9HC35 981 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 ZCCHC17Q9NP64 241 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 IL1RAPL1Q9NZN1 696 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 NAMPTP43490 491 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 ALDH7A1P49419 539 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 KPNA1P52294 538 aaPredicted RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 RAD23BP54727 409 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 TMCO4Q5TGY1 634 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 NLRP14Q86W24 1093 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 CALML6Q8TD86 181 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 SGSM3Q96HU1 749 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 C3orf70A6NLC5 250 aaPredicted RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 SPAG6O75602 509 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 CABYRO75952 493 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 EIF2S1P05198 315 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 S100A1P23297 94 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 RPL10AP62906 217 aaKnown RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 PDIA6Q15084 440 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 MAPRE2Q15555 327 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 CLEC17AQ6ZS10 378 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 NIPA1Q7RTP0 329 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 PACS2Q86VP3 889 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 SPON2Q9BUD6 331 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 MMADHCQ9H3L0 296 aaPredicted RBP13.4□□□□□ -0.26
USP40-201ENST00000251722 CARD8Q9Y2G2 431 aa13.4□□□□□ -0.26
USP40-201ENST00000251722 CFAP99D6REC4 459 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 DAB1O75553 588 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 ATP6V0D2Q8N8Y2 350 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 SNRNP27Q8WVK2 155 aaKnown RBP13.39□□□□□ -0.27
USP40-201ENST00000251722 SYN2Q92777 582 aaPredicted RBP13.39□□□□□ -0.27
USP40-201ENST00000251722 VTA1Q9NP79 307 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 CHMP2BQ9UQN3 213 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 HARS2P49590 506 aaKnown RBP13.39□□□□□ -0.27
USP40-201ENST00000251722 STX3Q13277 289 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 MYBPC2Q14324 1141 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 IMPG1Q17R60 797 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 FLCNQ8NFG4 579 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 TMEM169Q96HH4 297 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 CCDC138Q96M89 665 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 PCDHB2Q9Y5E7 798 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 SNX9Q9Y5X1 595 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 GMNCA6NCL1 334 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 ADCY3O60266 1144 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 MSCO60682 206 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 C2orf54Q08AI8 447 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 PCNX4Q63HM2 1172 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 KIAA1683Q9H0B3 1180 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 CARD9Q9H257 536 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 MSL3P1P0C860 447 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 FMO5P49326 533 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 ARHGDIAP52565 204 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 WASHC5Q12768 1159 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 NME3Q13232 169 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 KDM4CQ9H3R0 1056 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 KCNH7Q9NS40 1196 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 IPPQ9Y573 584 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 HEY1Q9Y5J3 304 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 A0A1W2PQJ5 194 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 MAPK13O15264 365 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 PBXIP1Q96AQ6 731 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 REEP2Q9BRK0 252 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 SLC40A1Q9NP59 571 aa13.39□□□□□ -0.27
USP40-201ENST00000251722 MAPTP10636 758 aaKnown RBP13.38□□□□□ -0.27
USP40-201ENST00000251722 AXLP30530 894 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 ETFBP38117 255 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 CDH6P55285 790 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 TUBA4AP68366 448 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 AP1B1Q10567 949 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 ADSSL1Q8N142 457 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 ATPAF2Q8N5M1 289 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 CD248Q9HCU0 757 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 TCF7P36402 384 aaPredicted RBP13.38□□□□□ -0.27
USP40-201ENST00000251722 CASP2P42575 452 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 ST13P50502 369 aaKnown RBP13.38□□□□□ -0.27
USP40-201ENST00000251722 TUBA3CQ13748 450 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 KRT80Q6KB66 452 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 SAMD7Q7Z3H4 446 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 SUPT3HO75486 399 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 APOA4P06727 396 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 FLOT2Q14254 428 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 PDK1Q15118 436 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 PASD1Q8IV76 773 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 SH3KBP1Q96B97 665 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms