RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KLHL2O95198 593 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 GYPCP04921 128 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 CACNB2Q08289 660 aaPredicted RBP14.22□□□□□ -0.13
SF3A1-201ENST00000215793 KRT72Q14CN4 511 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 MTFR1Q15390 333 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 LONRF1Q17RB8 773 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 LRRC8BQ6P9F7 803 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 SH2D3CQ8N5H7 860 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 TBC1D19Q8N5T2 526 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 PCYOX1LQ8NBM8 494 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 C17orf75Q9HAS0 396 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 CNTNAP5Q8WYK1 1306 aa14.22□□□□□ -0.13
SF3A1-201ENST00000215793 EEF2KO00418 725 aaKnown RBP14.21□□□□□ -0.13
SF3A1-201ENST00000215793 NDUFS3O75489 264 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 SLC25A27O95847 323 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 ENO1P06733 434 aaKnown RBP14.21□□□□□ -0.13
SF3A1-201ENST00000215793 SPATA18Q8TC71 538 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 FOPNLQ96NB1 174 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 CNOT7Q9UIV1 285 aaKnown RBP14.21□□□□□ -0.13
SF3A1-201ENST00000215793 CAMTA2O94983 1202 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 ALDH1A1P00352 501 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 RBP3P10745 1247 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 MAP4P27816 1152 aaKnown RBP14.21□□□□□ -0.13
SF3A1-201ENST00000215793 MED21Q13503 144 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 KLHDC7AQ5VTJ3 777 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 POTEAQ6S8J7 498 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 PKD2L2Q9NZM6 624 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 CDV3Q9UKY7 258 aaKnown RBP14.21□□□□□ -0.13
SF3A1-201ENST00000215793 RASSF10A6NK89 507 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 EXTL3O43909 919 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 POLBP06746 335 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 CNGA3Q16281 694 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 COBLL1Q53SF7 1204 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 C6orf10Q5SRN2 563 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 ANKS3Q6ZW76 656 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 FBXO33Q7Z6M2 555 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 USP38Q8NB14 1042 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 JMJD4Q9H9V9 463 aa14.21□□□□□ -0.13
SF3A1-201ENST00000215793 GLI2P10070 1586 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 H0Y626 953 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 DYNC1LI2O43237 492 aaPredicted RBP14.21□□□□□ -0.14
SF3A1-201ENST00000215793 TADA2AO75478 443 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 TRIM16O95361 564 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 MAGEA4P43358 317 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 PTK7Q13308 1070 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 SNX17Q15036 470 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 EFHC1Q5JVL4 640 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 ATF7IP2Q5U623 682 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 CAPRIN2Q6IMN6 1127 aaKnown RBP14.21□□□□□ -0.14
SF3A1-201ENST00000215793 C4orf33Q8N1A6 199 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 TTC30BQ8N4P2 665 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 MMGT1Q8N4V1 131 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 ISCUQ9H1K1 167 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 CARD9Q9H257 536 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 ELP3Q9H9T3 547 aa14.21□□□□□ -0.14
SF3A1-201ENST00000215793 EPB41L4AQ9HCS5 686 aaPredicted RBP14.21□□□□□ -0.14
SF3A1-201ENST00000215793 ZNF70Q9UC06 446 aaPredicted RBP14.21□□□□□ -0.14
SF3A1-201ENST00000215793 IQGAP3Q86VI3 1631 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 ALKQ9UM73 1620 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 PXDNLA1KZ92 1463 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 DAB2P98082 770 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 SV2CQ496J9 727 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 PABPC5Q96DU9 382 aaKnown RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 CMTM5Q96DZ9 223 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 VPS33BQ9H267 617 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 NPHS2Q9NP85 383 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 GRID1Q9ULK0 1009 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 MTO1Q9Y2Z2 717 aaKnown RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 RAD51CO43502 376 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 HBP1O60381 514 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 EFCAB14O75071 495 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 FDPSP14324 419 aaKnown RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 VCPP55072 806 aaKnown RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 ZC2HC1CQ53FD0 456 aaPredicted RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 CST8O60676 142 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 C3orf62Q6ZUJ4 267 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 KDELC2Q7Z4H8 507 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 SETD3Q86TU7 594 aaPredicted RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 TTC30AQ86WT1 665 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 TASP1Q9H6P5 420 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 CATSPERBQ9H7T0 1116 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 GTF3C4Q9UKN8 822 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 C16orf96A6NNT2 1141 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 APOA1P02647 267 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 WEE2P0C1S8 567 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 HLA-DPA1P20036 260 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 SERPINB10P48595 397 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 DCP1BQ8IZD4 617 aaKnown RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 STX19Q8N4C7 294 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 CHST13Q8NET6 341 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 LATS2Q9NRM7 1088 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 ERAP1Q9NZ08 941 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 TSR3Q9UJK0 312 aaKnown RBP14.2□□□□□ -0.14
SF3A1-201ENST00000215793 CHMP2BQ9UQN3 213 aa14.2□□□□□ -0.14
SF3A1-201ENST00000215793 REREQ9P2R6 1566 aa14.19□□□□□ -0.14
SF3A1-201ENST00000215793 STK25O00506 426 aa14.19□□□□□ -0.14
SF3A1-201ENST00000215793 MYL2P10916 166 aa14.19□□□□□ -0.14
SF3A1-201ENST00000215793 ST8SIA6P61647 398 aa14.19□□□□□ -0.14
SF3A1-201ENST00000215793 BOLA3Q53S33 107 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms