RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.35□□□□□ -1.392e-6■■■■■ 55.4
VPS13D-201ENST00000011700 ANXA9O76027 345 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NAB1Q13506 487 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CCDC144BQ3MJ40 725 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SPATA21Q7Z572 469 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RIT1Q92963 219 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 EYA1Q99502 592 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 C1orf50Q9BV19 199 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 EMILIN2Q9BXX0 1053 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RRN3Q9NYV6 651 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 WHRNQ9P202 907 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 GGA2Q9UJY4 613 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 OVOS2A0A0J9YW53 1432 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 OVOS2Q6IE36 1432 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NR3C1P04150 777 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CALB2P22676 271 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 AKAP5P24588 427 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NR2C2P49116 596 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 MAGOHP61326 146 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 USPL1Q5W0Q7 1092 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NEK10Q6ZWH5 1172 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CCDC36Q8IYA8 594 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 FAM133AQ8N9E0 248 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PDCD6IPQ8WUM4 868 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 HAVCR1Q96D42 359 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 HEXIM2Q96MH2 286 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CAMKK2Q96RR4 588 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ZBTB1Q9Y2K1 713 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 LRRN2O75325 713 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PLCG1P19174 1290 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 VSNL1P62760 191 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SF3A3Q12874 501 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RESTQ13127 1097 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 HIST2H2ACQ16777 129 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 HIST2H2AA3Q6FI13 130 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RYBPQ8N488 228 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TRPC4APQ8TEL6 797 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ITM2BQ9Y287 266 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 KIF28PB7ZC32 967 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RPS6KA5O75582 802 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 S100A9P06702 114 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NLRP14Q86W24 1093 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 C19orf18Q8NEA5 215 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PI4K2BQ8TCG2 481 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NCOA5Q9HCD5 579 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TTC7AQ9ULT0 858 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 IRGMA1A4Y4 181 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RPN2P04844 631 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PIK3R1P27986 724 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NAPEPLDQ6IQ20 393 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CDC73Q6P1J9 531 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RASGRP2Q7LDG7 609 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ZNF564Q8TBZ8 553 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 DEPDC7Q96QD5 511 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TSEN34Q9BSV6 310 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 GTSE1Q9NYZ3 720 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 IGSF9BQ9UPX0 1349 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SCN3AQ9NY46 2000 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ADCY6O43306 1168 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PHF2O75151 1096 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 MYL2P10916 166 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 GPS1Q13098 491 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 GPR141Q7Z602 305 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ATP8B4Q8TF62 1192 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ZNF518BQ9C0D4 1074 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RIBC2Q9H4K1 309 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SAYSD1Q9NPB0 183 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 VPS51Q9UID3 782 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CLTCQ00610 1675 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TMEM114B3SHH9 223 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PJA2O43164 708 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 HMOX2P30519 316 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 GRK3P35626 688 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 KRT31Q15323 416 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 PKN3Q6P5Z2 889 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ZNF483Q8TF39 744 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 HSPH1Q92598 858 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ASIC4Q96FT7 647 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ERBB3P21860 1342 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 H3BQF6 201 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TLR2O60603 784 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TNFAIP8O95379 198 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CAPN1P07384 714 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 GMFBP60983 142 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 MTERF2Q49AM1 385 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CC2D1AQ6P1N0 951 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SGMS1Q86VZ5 419 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NELFCDQ8IXH7 590 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 REPS1Q96D71 796 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 DBNDD2Q9BQY9 259 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ADNPQ9H2P0 1102 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TMEM161AQ9NX61 479 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 TEX46H3BTG2 121 aa6.34□□□□□ -1.39
VPS13D-201ENST00000011700 KCNA6P17658 529 aa6.34□□□□□ -1.39
VPS13D-201ENST00000011700 PSMC3P17980 439 aa6.34□□□□□ -1.39
VPS13D-201ENST00000011700 ITGB6P18564 788 aa6.34□□□□□ -1.39
VPS13D-201ENST00000011700 RABGAP1LQ5R372 815 aa6.34□□□□□ -1.39
VPS13D-201ENST00000011700 SYDE2Q5VT97 1194 aa6.34□□□□□ -1.39
VPS13D-201ENST00000011700 PEG10Q86TG7 708 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms