RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UFD4	YKL010C	PDI1	P17967	522 aa	Known RBP	2.74	□□□□□ -1.97
UFD4	YKL010C	YNL050C	P53952	270 aa		2.74	□□□□□ -1.97
UFD4	YKL010C	SRC1	Q03707	834 aa		2.74	□□□□□ -1.97
UFD4	YKL010C	YDL144C	Q07589	356 aa		2.74	□□□□□ -1.97
UFD4	YKL010C	LEU2	P04173	364 aa	Predicted RBP	2.73	□□□□□ -1.97
UFD4	YKL010C	GAP1	P19145	602 aa	Predicted RBP	2.73	□□□□□ -1.97
UFD4	YKL010C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	2.73	□□□□□ -1.97	RIP-Chip
UFD4	YKL010C	YDR090C	Q03193	310 aa		2.73	□□□□□ -1.97
UFD4	YKL010C	CDC73	Q06697	393 aa		2.73	□□□□□ -1.97
UFD4	YKL010C	CDC16	P09798	840 aa		2.72	□□□□□ -1.97
UFD4	YKL010C	YMR196W	Q04336	1088 aa		2.72	□□□□□ -1.97
UFD4	YKL010C	GCD7	P32502	381 aa	Predicted RBP	2.72	□□□□□ -1.97
UFD4	YKL010C	MAM1	P40065	302 aa		2.72	□□□□□ -1.97
UFD4	YKL010C	RAD54	P32863	898 aa		2.72	□□□□□ -1.97
UFD4	YKL010C	HIM1	Q06674	414 aa		2.72	□□□□□ -1.97
UFD4	YKL010C	RPS19A	P07280	144 aa	Known RBP	2.71	□□□□□ -1.98
UFD4	YKL010C	RPS19B	P07281	144 aa	Predicted RBP	2.71	□□□□□ -1.98
UFD4	YKL010C	VHR2	P40041	505 aa		2.71	□□□□□ -1.98
UFD4	YKL010C	SAS4	Q04003	481 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	YDR306C	Q06640	478 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	RPP1B	P10622	106 aa	Known RBP	2.7	□□□□□ -1.98
UFD4	YKL010C	RCM1	P53972	490 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	RTT109	Q07794	436 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	RAD50	P12753	1312 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	RSF2	P46974	1380 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	NTH2	P35172	780 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	SNF7	P39929	240 aa	Known RBP	2.7	□□□□□ -1.98
UFD4	YKL010C	YPP1	P46951	817 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	MPP10	P47083	593 aa	Known RBP	2.7	□□□□□ -1.98
UFD4	YKL010C	POL32	P47110	350 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	DSD1	P53095	428 aa		2.7	□□□□□ -1.98
UFD4	YKL010C	ECM16	Q04217	1267 aa	Known RBP	2.7	□□□□□ -1.98
UFD4	YKL010C	HYR1	P40581	163 aa	Known RBP	2.69	□□□□□ -1.98
UFD4	YKL010C	REF2	P42073	533 aa	Predicted RBP	2.69	□□□□□ -1.98
UFD4	YKL010C	RTF1	P53064	558 aa		2.69	□□□□□ -1.98
UFD4	YKL010C	KRE33	P53914	1056 aa	Known RBP	2.69	□□□□□ -1.98
UFD4	YKL010C	TFB4	Q12004	338 aa		2.69	□□□□□ -1.98
UFD4	YKL010C	MAK21	Q12176	1025 aa	Known RBP	2.69	□□□□□ -1.98
UFD4	YKL010C	RPC31	P17890	251 aa		2.69	□□□□□ -1.98
UFD4	YKL010C	SDH2	P21801	266 aa		2.69	□□□□□ -1.98
UFD4	YKL010C	RTR1	P40084	226 aa	Predicted RBP	2.69	□□□□□ -1.98
UFD4	YKL010C	PIL1	P53252	339 aa	Known RBP	2.68	□□□□□ -1.98
UFD4	YKL010C	CSC1	Q06538	782 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	PDR1	P12383	1068 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	RIA1	P53893	1110 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	AMS1	P22855	1083 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	ORC6	P38826	435 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	KAR2	P16474	682 aa	Known RBP	2.68	□□□□□ -1.98
UFD4	YKL010C	AKL1	P38080	1108 aa	Known RBP	2.68	□□□□□ -1.98
UFD4	YKL010C	RRT14	P40470	206 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	MRX12	P47084	519 aa		2.68	□□□□□ -1.98
UFD4	YKL010C	RAD2	P07276	1031 aa		2.67	□□□□□ -1.98
UFD4	YKL010C	GYP7	P48365	746 aa		2.67	□□□□□ -1.98
UFD4	YKL010C	RAS1	P01119	309 aa		2.67	□□□□□ -1.98
UFD4	YKL010C	AIM44	Q99299	758 aa		2.67	□□□□□ -1.98
UFD4	YKL010C	PCT1	P13259	424 aa		2.67	□□□□□ -1.98
UFD4	YKL010C	UGA3	P26370	528 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	TPD3	P31383	635 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	SRT1	Q03175	343 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	ROX1	P25042	368 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	SLM3	Q12093	417 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	MYO1	P08964	1928 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	COX6	P00427	148 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	ECM23	Q02710	187 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	BUD20	Q08004	166 aa	Predicted RBP	2.66	□□□□□ -1.98
UFD4	YKL010C	YOL057W	Q08225	711 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	NOT3	P06102	836 aa	Known RBP	2.66	□□□□□ -1.98
UFD4	YKL010C	CLC1	P17891	233 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	BDH2	P39713	417 aa		2.66	□□□□□ -1.98
UFD4	YKL010C	MPE1	P35728	441 aa	Known RBP	2.65	□□□□□ -1.99
UFD4	YKL010C	KIC1	P38692	1080 aa		2.65	□□□□□ -1.99
UFD4	YKL010C	STR2	P47164	639 aa		2.65	□□□□□ -1.99
UFD4	YKL010C	GYP1	Q08484	637 aa		2.65	□□□□□ -1.99
UFD4	YKL010C	SAC3	P46674	1301 aa		2.65	□□□□□ -1.99
UFD4	YKL010C	INP54	Q08227	384 aa	Known RBP	2.65	□□□□□ -1.99
UFD4	YKL010C	FKS1	P38631	1876 aa	Known RBP	2.65	□□□□□ -1.99
UFD4	YKL010C	SSK22	P25390	1331 aa	Predicted RBP	2.65	□□□□□ -1.99
UFD4	YKL010C	GCR2	Q01722	534 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	PRT1	P06103	763 aa	Known RBP	2.64	□□□□□ -1.99
UFD4	YKL010C	RPS24A	P0CX31	135 aa	Known RBP	2.64	□□□□□ -1.99
UFD4	YKL010C	RPS24B	P0CX32	135 aa	Known RBP	2.64	□□□□□ -1.99
UFD4	YKL010C	MSP1	P28737	362 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	BOI2	P39969	1040 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	ORC1	P54784	914 aa	Predicted RBP	2.64	□□□□□ -1.99
UFD4	YKL010C	YRR1	Q12172	810 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	SWI1	P09547	1314 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	COQ4	O13525	335 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	GSC2	P40989	1895 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	MRF1	P30775	413 aa	Predicted RBP	2.64	□□□□□ -1.99
UFD4	YKL010C	ELM1	P32801	640 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	YEL077C	Q3E7X8	1277 aa		2.64	□□□□□ -1.99
UFD4	YKL010C	FPR3	P38911	411 aa	Known RBP	2.63	□□□□□ -1.99
UFD4	YKL010C	ISM1	P48526	1002 aa		2.63	□□□□□ -1.99
UFD4	YKL010C	ZDS1	P50111	915 aa	Known RBP	2.63	□□□□□ -1.99
UFD4	YKL010C	AOS1	Q06624	347 aa		2.63	□□□□□ -1.99
UFD4	YKL010C	TRL1	P09880	827 aa	Known RBP	2.63	□□□□□ -1.99
UFD4	YKL010C	KCC4	P25389	1037 aa		2.63	□□□□□ -1.99
UFD4	YKL010C	NUD1	P32336	851 aa		2.63	□□□□□ -1.99
UFD4	YKL010C	MVP1	P40959	511 aa	Known RBP	2.63	□□□□□ -1.99
UFD4	YKL010C	PEX21	P50091	288 aa		2.63	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms