RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 RIMS2Q9UQ26 1411 aa15.59■□□□□ 0.09
SCN1A-222ENST00000642141 GCC2Q8IWJ2 1684 aa15.58■□□□□ 0.08
SCN1A-222ENST00000642141 KCNA6P17658 529 aa15.58■□□□□ 0.08
SCN1A-222ENST00000642141 PROSER2Q86WR7 435 aaPredicted RBP15.58■□□□□ 0.08
SCN1A-222ENST00000642141 IQGAP3Q86VI3 1631 aa15.57■□□□□ 0.08
SCN1A-222ENST00000642141 TRIM52Q96A61 297 aa15.57■□□□□ 0.08
SCN1A-222ENST00000642141 ALKQ9UM73 1620 aa15.57■□□□□ 0.08
SCN1A-222ENST00000642141 KDM5AP29375 1690 aaKnown RBP15.57■□□□□ 0.08
SCN1A-222ENST00000642141 MYO5BQ9ULV0 1848 aa15.57■□□□□ 0.08
SCN1A-222ENST00000642141 HDGFP51858 240 aaKnown RBP15.56■□□□□ 0.08
SCN1A-222ENST00000642141 TMEM131LA2VDJ0 1609 aa15.55■□□□□ 0.08
SCN1A-222ENST00000642141 ZFYVE9O95405 1425 aa15.55■□□□□ 0.08
SCN1A-222ENST00000642141 TMEM94Q12767 1356 aa15.55■□□□□ 0.08
SCN1A-222ENST00000642141 NAIPQ13075 1403 aa15.54■□□□□ 0.08
SCN1A-222ENST00000642141 ZNF326Q5BKZ1 582 aaKnown RBP15.53■□□□□ 0.08
SCN1A-222ENST00000642141 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.53■□□□□ 0.08
SCN1A-222ENST00000642141 PLEKHG1Q9ULL1 1385 aa15.52■□□□□ 0.08
SCN1A-222ENST00000642141 XIRP1Q702N8 1843 aaKnown RBP15.5■□□□□ 0.07
SCN1A-222ENST00000642141 TBX22Q9Y458 520 aa15.49■□□□□ 0.07
SCN1A-222ENST00000642141 FOXD1Q16676 465 aa15.48■□□□□ 0.07
SCN1A-222ENST00000642141 C14orf37Q86TY3 774 aa15.48■□□□□ 0.07
SCN1A-222ENST00000642141 SLC4A1APQ9BWU0 796 aaKnown RBP15.47■□□□□ 0.07
SCN1A-222ENST00000642141 HFM1A2PYH4 1435 aa15.45■□□□□ 0.06
SCN1A-222ENST00000642141 ADAMTS13Q76LX8 1427 aa15.45■□□□□ 0.06
SCN1A-222ENST00000642141 SPHKAPQ2M3C7 1700 aa15.44■□□□□ 0.06
SCN1A-222ENST00000642141 SLAIN2Q9P270 581 aa15.44■□□□□ 0.06
SCN1A-222ENST00000642141 AMOTL2Q9Y2J4 779 aa15.44■□□□□ 0.06
SCN1A-222ENST00000642141 MSH6P52701 1360 aa15.44■□□□□ 0.06
SCN1A-222ENST00000642141 NKTRP30414 1462 aaKnown RBP15.43■□□□□ 0.06
SCN1A-222ENST00000642141 NWD1Q149M9 1564 aa15.43■□□□□ 0.06
SCN1A-222ENST00000642141 MED1Q15648 1581 aaPredicted RBP15.42■□□□□ 0.06
SCN1A-222ENST00000642141 PHF23Q9BUL5 403 aaPredicted RBP15.42■□□□□ 0.06
SCN1A-222ENST00000642141 CLTCL1P53675 1640 aa15.42■□□□□ 0.06
SCN1A-222ENST00000642141 CHD2O14647 1828 aaKnown RBP15.41■□□□□ 0.06
SCN1A-222ENST00000642141 FAM135BQ49AJ0 1406 aa15.41■□□□□ 0.06
SCN1A-222ENST00000642141 PTPRUQ92729 1446 aa15.41■□□□□ 0.06
SCN1A-222ENST00000642141 SOCS7O14512 581 aa15.4■□□□□ 0.06
SCN1A-222ENST00000642141 METP08581 1390 aa15.39■□□□□ 0.05
SCN1A-222ENST00000642141 TRPM2O94759 1503 aa15.38■□□□□ 0.05
SCN1A-222ENST00000642141 ATF3P18847 181 aa15.38■□□□□ 0.05
SCN1A-222ENST00000642141 ROBO1Q9Y6N7 1651 aa15.38■□□□□ 0.05
SCN1A-222ENST00000642141 MPHOSPH9Q99550 1183 aa15.37■□□□□ 0.05
SCN1A-222ENST00000642141 C19orf44Q9H6X5 657 aa15.37■□□□□ 0.05
SCN1A-222ENST00000642141 RGL3Q3MIN7 710 aa15.36■□□□□ 0.05
SCN1A-222ENST00000642141 DIP2AQ14689 1571 aa15.36■□□□□ 0.05
SCN1A-222ENST00000642141 PIK3R4Q99570 1358 aa15.36■□□□□ 0.05
SCN1A-222ENST00000642141 NRXN3Q9Y4C0 1643 aa15.35■□□□□ 0.05
SCN1A-222ENST00000642141 NEXMIFQ5QGS0 1516 aa15.34■□□□□ 0.05
SCN1A-222ENST00000642141 VGFO15240 615 aaPredicted RBP15.34■□□□□ 0.05
SCN1A-222ENST00000642141 CADPS2Q86UW7 1296 aa15.34■□□□□ 0.05
SCN1A-222ENST00000642141 SETBP1Q9Y6X0 1596 aa15.33■□□□□ 0.05
SCN1A-222ENST00000642141 KIF1BO60333 1816 aa15.33■□□□□ 0.04
SCN1A-222ENST00000642141 RGS17Q9UGC6 210 aaPredicted RBP15.31■□□□□ 0.04
SCN1A-222ENST00000642141 NCOA3Q9Y6Q9 1424 aa15.31■□□□□ 0.04
SCN1A-222ENST00000642141 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.31■□□□□ 0.04
SCN1A-222ENST00000642141 SETD5Q9C0A6 1442 aa15.29■□□□□ 0.04
SCN1A-222ENST00000642141 RPGRIP1LQ68CZ1 1315 aa15.29■□□□□ 0.04
SCN1A-222ENST00000642141 CCDC144AA2RUR9 1427 aa15.28■□□□□ 0.04
SCN1A-222ENST00000642141 ADGRF5Q8IZF2 1346 aa15.28■□□□□ 0.04
SCN1A-222ENST00000642141 BRINP3Q76B58 766 aa15.28■□□□□ 0.04
SCN1A-222ENST00000642141 PHLPP1O60346 1717 aa15.28■□□□□ 0.04
SCN1A-222ENST00000642141 XRN1Q8IZH2 1706 aaKnown RBP15.27■□□□□ 0.04
SCN1A-222ENST00000642141 DDX17Q92841 729 aaKnown RBP15.27■□□□□ 0.04
SCN1A-222ENST00000642141 STK26Q9P289 416 aa15.27■□□□□ 0.04
SCN1A-222ENST00000642141 RAB3GAP2Q9H2M9 1393 aa15.25■□□□□ 0.03
SCN1A-222ENST00000642141 ROBO2Q9HCK4 1378 aa15.25■□□□□ 0.03
SCN1A-222ENST00000642141 JCADQ9P266 1359 aa15.24■□□□□ 0.03
SCN1A-222ENST00000642141 TMEM132EQ6IEE7 984 aa15.24■□□□□ 0.03
SCN1A-222ENST00000642141 POTEAQ6S8J7 498 aa15.24■□□□□ 0.03
SCN1A-222ENST00000642141 NUTM2BA6NNL0 878 aaPredicted RBP15.23■□□□□ 0.03
SCN1A-222ENST00000642141 NUTM2EB1AL46 878 aaPredicted RBP15.23■□□□□ 0.03
SCN1A-222ENST00000642141 NUTM2AQ8IVF1 878 aaPredicted RBP15.23■□□□□ 0.03
SCN1A-222ENST00000642141 MEX3CQ5U5Q3 659 aaKnown RBP15.22■□□□□ 0.03
SCN1A-222ENST00000642141 MST1RQ04912 1400 aa15.22■□□□□ 0.03
SCN1A-222ENST00000642141 SPATA31E1Q6ZUB1 1445 aa15.22■□□□□ 0.03
SCN1A-222ENST00000642141 ADGRL3Q9HAR2 1447 aa15.22■□□□□ 0.03
SCN1A-222ENST00000642141 PPLO60437 1756 aa15.21■□□□□ 0.03
SCN1A-222ENST00000642141 COL16A1Q07092 1604 aaPredicted RBP15.21■□□□□ 0.02
SCN1A-222ENST00000642141 DCCP43146 1447 aa15.2■□□□□ 0.02
SCN1A-222ENST00000642141 WAPLQ7Z5K2 1190 aa15.2■□□□□ 0.02
SCN1A-222ENST00000642141 ORAI2Q96SN7 254 aa15.2■□□□□ 0.02
SCN1A-222ENST00000642141 ASXL1Q8IXJ9 1541 aa15.19■□□□□ 0.02
SCN1A-222ENST00000642141 SETD1AO15047 1707 aaKnown RBP15.19■□□□□ 0.02
SCN1A-222ENST00000642141 NALCNQ8IZF0 1738 aa15.19■□□□□ 0.02
SCN1A-222ENST00000642141 NUTM2FA1L443 756 aa15.18■□□□□ 0.02
SCN1A-222ENST00000642141 ANKRD30BQ9BXX2 1392 aa15.18■□□□□ 0.02
SCN1A-222ENST00000642141 LRP6O75581 1613 aa15.17■□□□□ 0.02
SCN1A-222ENST00000642141 AHDC1Q5TGY3 1603 aaPredicted RBP15.17■□□□□ 0.02
SCN1A-222ENST00000642141 PTCH1Q13635 1447 aa15.17■□□□□ 0.02
SCN1A-222ENST00000642141 SPATA31A6Q5VVP1 1343 aa15.17■□□□□ 0.02
SCN1A-222ENST00000642141 C1orf167Q5SNV9 1468 aa15.16■□□□□ 0.02
SCN1A-222ENST00000642141 CFAP70Q5T0N1 1121 aa15.16■□□□□ 0.02
SCN1A-222ENST00000642141 ACIN1Q9UKV3 1341 aaKnown RBP15.16■□□□□ 0.02
SCN1A-222ENST00000642141 LRRC59Q96AG4 307 aaKnown RBP15.15■□□□□ 0.02
SCN1A-222ENST00000642141 KDM2AQ9Y2K7 1162 aa15.15■□□□□ 0.02
SCN1A-222ENST00000642141 PLEKHH1Q9ULM0 1364 aa15.14■□□□□ 0.01
SCN1A-222ENST00000642141 ESCO1Q5FWF5 840 aa15.14■□□□□ 0.01
SCN1A-222ENST00000642141 PIK3C2GO75747 1445 aa15.13■□□□□ 0.01
SCN1A-222ENST00000642141 XPCQ01831 940 aaPredicted RBP15.13■□□□□ 0.01
SCN1A-222ENST00000642141 SAFB2Q14151 953 aaKnown RBP eCLIP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms