RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MTERF4Q7Z6M4 381 aaKnown RBP3.38□□□□□ -1.87
SCN1A-219ENST00000641575 PRPF31Q8WWY3 499 aaKnown RBP3.38□□□□□ -1.87
SCN1A-219ENST00000641575 ASXL3Q9C0F0 2248 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 ERICH2A1L162 156 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 SLU7O95391 586 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 AKAP17AQ02040 695 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 SYNE3Q6ZMZ3 975 aa3.37□□□□□ -1.87
SCN1A-219ENST00000641575 NEBLO76041 1014 aa3.37□□□□□ -1.87
SCN1A-219ENST00000641575 SPTAN1Q13813 2472 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 DCTN1Q14203 1278 aa3.37□□□□□ -1.87
SCN1A-219ENST00000641575 KIAA1211Q6ZU35 1233 aa3.37□□□□□ -1.87
SCN1A-219ENST00000641575 MYH6P13533 1939 aa3.37□□□□□ -1.87
SCN1A-219ENST00000641575 VGFO15240 615 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 HMGN5P82970 282 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 IPO7O95373 1038 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 CCAR2Q8N163 923 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 SCN1AP35498 2009 aa3.37□□□□□ -1.87
SCN1A-219ENST00000641575 CENPQQ7L2Z9 268 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 RBM28Q9NW13 759 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 HOOK1Q9UJC3 728 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 CT47A1Q5JQC4 288 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 TNPO1Q92973 898 aaKnown RBP3.37□□□□□ -1.87
SCN1A-219ENST00000641575 NACADO15069 1562 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 KIAA0100Q14667 2235 aaKnown RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 PAXIP1Q6ZW49 1069 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 FERMT1Q9BQL6 677 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 ACBD3Q9H3P7 528 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 WDR70Q9NW82 654 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 SPTBN1Q01082 2364 aaKnown RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 KIF3BO15066 747 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 PDCL3Q9H2J4 239 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 FAM13BQ9NYF5 915 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 RTTNQ86VV8 2226 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 TPM1P09493 284 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 PDE4AP27815 886 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 RGS3P49796 1198 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 SPRYD3Q8NCJ5 442 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 ANKRD20A12PQ8NF67 263 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 SALL2Q9Y467 1007 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 FAM186AA6NE01 2351 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 PLCD4Q9BRC7 762 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 KNSTRNQ9Y448 316 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 CENPJQ9HC77 1338 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 CLIP1P30622 1438 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 DDX10Q13206 875 aaKnown RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 SART3Q15020 963 aaKnown RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 GZF1Q9H116 711 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 PRC1O43663 620 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 XBP1P17861 261 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 HAUS2Q9NVX0 235 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 DDX11L8A8MPP1 907 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 PAK3O75914 559 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 ATF3P18847 181 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 RSF1Q96T23 1441 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-219ENST00000641575 SYCP1Q15431 976 aa3.36□□□□□ -1.87
SCN1A-219ENST00000641575 BRWD1Q9NSI6 2320 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 H0YHG0 523 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 DNAJC13O75165 2243 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 SRCIN1Q9C0H9 1055 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 HDGFL2Q7Z4V5 671 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-219ENST00000641575 CHMP5Q9NZZ3 219 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 KIF16BQ96L93 1317 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 GIMAP7Q8NHV1 300 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 NF2P35240 595 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 TMEM132AQ24JP5 1023 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 HSP90AB4PQ58FF6 505 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 TAOK2Q9UL54 1235 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 DOPEY2Q9Y3R5 2298 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 NAV3Q8IVL0 2385 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 RGS22Q8NE09 1264 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 RUFY1Q96T51 708 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 SSX2IPQ9Y2D8 614 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 ARGLU1Q9NWB6 273 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-219ENST00000641575 SETD1BQ9UPS6 1966 aaKnown RBP3.35□□□□□ -1.87
SCN1A-219ENST00000641575 CUL5Q93034 780 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 PPP4R3AQ6IN85 833 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 CLGNO14967 610 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 ZNF287Q9HBT7 754 aa3.35□□□□□ -1.87
SCN1A-219ENST00000641575 CBX1P83916 185 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 FBXO3Q9UK99 471 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 SCN2AQ99250 2005 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 EXOC5O00471 708 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 ELMSAN1Q6PJG2 1045 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 C11orf95C9JLR9 678 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-219ENST00000641575 NAP1L1P55209 391 aaKnown RBP3.34□□□□□ -1.87
SCN1A-219ENST00000641575 EP300Q09472 2414 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-219ENST00000641575 INTS1Q8N201 2190 aaKnown RBP3.34□□□□□ -1.87
SCN1A-219ENST00000641575 TTC5Q8N0Z6 440 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 GTPBP4Q9BZE4 634 aaKnown RBP3.34□□□□□ -1.87
SCN1A-219ENST00000641575 ZNF407Q9C0G0 2248 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 PLEKHG5O94827 1062 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 BRMS1Q9HCU9 246 aa3.34□□□□□ -1.87
SCN1A-219ENST00000641575 RBM19Q9Y4C8 960 aaKnown RBP3.34□□□□□ -1.87
SCN1A-219ENST00000641575 CNGA1P29973 690 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 PSME1Q06323 249 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 BIRC2Q13490 618 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 PIBF1Q8WXW3 757 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 AHCTF1Q8WYP5 2266 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 USP8P40818 1118 aa3.34□□□□□ -1.88
SCN1A-219ENST00000641575 TRIM22Q8IYM9 498 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms