RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ARID4BQ4LE39 1312 aaPredicted RBP14.9□□□□□ -0.02
CLN3-248ENST00000636355 FBXO41Q8TF61 875 aa14.89□□□□□ -0.03
CLN3-248ENST00000636355 HSPA5P11021 654 aaKnown RBP14.88□□□□□ -0.03
CLN3-248ENST00000636355 NLRP1Q9C000 1473 aa14.88□□□□□ -0.03
CLN3-248ENST00000636355 RGL3Q3MIN7 710 aa14.87□□□□□ -0.03
CLN3-248ENST00000636355 ZNF326Q5BKZ1 582 aaKnown RBP14.86□□□□□ -0.03
CLN3-248ENST00000636355 ESF1Q9H501 851 aaKnown RBP14.86□□□□□ -0.03
CLN3-248ENST00000636355 SCAF11Q99590 1463 aaKnown RBP14.86□□□□□ -0.03
CLN3-248ENST00000636355 EIF3AQ14152 1382 aaKnown RBP14.85□□□□□ -0.03
CLN3-248ENST00000636355 ZMYM3Q14202 1370 aa14.85□□□□□ -0.03
CLN3-248ENST00000636355 CARD11Q9BXL7 1154 aa14.85□□□□□ -0.03
CLN3-248ENST00000636355 UBR1Q8IWV7 1749 aa14.85□□□□□ -0.03
CLN3-248ENST00000636355 ADAMTSL3P82987 1691 aa14.84□□□□□ -0.03
CLN3-248ENST00000636355 KDM2AQ9Y2K7 1162 aa14.84□□□□□ -0.03
CLN3-248ENST00000636355 A2ML1A8K2U0 1454 aa14.83□□□□□ -0.03
CLN3-248ENST00000636355 CCDC7Q96M83 1385 aa14.83□□□□□ -0.04
CLN3-248ENST00000636355 ADGRB1O14514 1584 aa14.82□□□□□ -0.04
CLN3-248ENST00000636355 TNRQ92752 1358 aa14.82□□□□□ -0.04
CLN3-248ENST00000636355 ZNF142P52746 1687 aaPredicted RBP14.81□□□□□ -0.04
CLN3-248ENST00000636355 SBNO2Q9Y2G9 1366 aa14.8□□□□□ -0.04
CLN3-248ENST00000636355 SETD1AO15047 1707 aaKnown RBP14.79□□□□□ -0.04
CLN3-248ENST00000636355 VGFO15240 615 aaPredicted RBP14.79□□□□□ -0.04
CLN3-248ENST00000636355 IDI1Q13907 227 aa14.79□□□□□ -0.04
CLN3-248ENST00000636355 WASHC2AQ641Q2 1341 aa14.79□□□□□ -0.04
CLN3-248ENST00000636355 RIMS1Q86UR5 1692 aaKnown RBP14.79□□□□□ -0.04
CLN3-248ENST00000636355 ARHGEF28Q8N1W1 1705 aaKnown RBP14.78□□□□□ -0.04
CLN3-248ENST00000636355 SLC24A1O60721 1099 aa14.78□□□□□ -0.04
CLN3-248ENST00000636355 ADGRF5Q8IZF2 1346 aa14.76□□□□□ -0.05
CLN3-248ENST00000636355 MLECQ14165 292 aa14.76□□□□□ -0.05
CLN3-248ENST00000636355 QRICH2Q9H0J4 1663 aa14.75□□□□□ -0.05
CLN3-248ENST00000636355 KIF7Q2M1P5 1343 aa14.75□□□□□ -0.05
CLN3-248ENST00000636355 FBXO31Q5XUX0 539 aaPredicted RBP14.75□□□□□ -0.05
CLN3-248ENST00000636355 SLIT1O75093 1534 aa14.75□□□□□ -0.05
CLN3-248ENST00000636355 KNDC1Q76NI1 1749 aa14.75□□□□□ -0.05
CLN3-248ENST00000636355 NRXN3Q9Y4C0 1643 aa14.74□□□□□ -0.05
CLN3-248ENST00000636355 CHGAP10645 457 aaKnown RBP14.74□□□□□ -0.05
CLN3-248ENST00000636355 ASXL1Q8IXJ9 1541 aa14.74□□□□□ -0.05
CLN3-248ENST00000636355 RIMS2Q9UQ26 1411 aa14.74□□□□□ -0.05
CLN3-248ENST00000636355 NBPF1Q3BBV0 1214 aa14.73□□□□□ -0.05
CLN3-248ENST00000636355 C14orf93Q9H972 538 aaKnown RBP14.73□□□□□ -0.05
CLN3-248ENST00000636355 ALKQ9UM73 1620 aa14.73□□□□□ -0.05
CLN3-248ENST00000636355 DIP2AQ14689 1571 aa14.73□□□□□ -0.05
CLN3-248ENST00000636355 CEP170BQ9Y4F5 1589 aaPredicted RBP14.73□□□□□ -0.05
CLN3-248ENST00000636355 DLC1Q96QB1 1528 aa14.72□□□□□ -0.05
CLN3-248ENST00000636355 ARHGAP23Q9P227 1491 aa14.72□□□□□ -0.05
CLN3-248ENST00000636355 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.72□□□□□ -0.05
CLN3-248ENST00000636355 SETD1BQ9UPS6 1966 aaKnown RBP14.72□□□□□ -0.05
CLN3-248ENST00000636355 LMTK3Q96Q04 1460 aa14.71□□□□□ -0.05
CLN3-248ENST00000636355 ST20-MTHFSA0A0A6YYL1 179 aa14.71□□□□□ -0.05
CLN3-248ENST00000636355 HIRIP3Q9BW71 556 aaPredicted RBP14.71□□□□□ -0.05
CLN3-248ENST00000636355 MYOM1P52179 1685 aa14.71□□□□□ -0.06
CLN3-248ENST00000636355 DDX10Q13206 875 aaKnown RBP14.7□□□□□ -0.06
CLN3-248ENST00000636355 STAG3Q9UJ98 1225 aa14.7□□□□□ -0.06
CLN3-248ENST00000636355 TMEM2Q9UHN6 1383 aa14.7□□□□□ -0.06
CLN3-248ENST00000636355 HDGFP51858 240 aaKnown RBP14.69□□□□□ -0.06
CLN3-248ENST00000636355 CDCA8Q53HL2 280 aa14.69□□□□□ -0.06
CLN3-248ENST00000636355 TESK2Q96S53 571 aa14.69□□□□□ -0.06
CLN3-248ENST00000636355 TMF1P82094 1093 aa14.68□□□□□ -0.06
CLN3-248ENST00000636355 CFAP70Q5T0N1 1121 aa14.67□□□□□ -0.06
CLN3-248ENST00000636355 CPS1P31327 1500 aa14.66□□□□□ -0.06
CLN3-248ENST00000636355 C11orf95C9JLR9 678 aaPredicted RBP14.66□□□□□ -0.06
CLN3-248ENST00000636355 PTPRMP28827 1452 aa14.65□□□□□ -0.06
CLN3-248ENST00000636355 KTN1Q86UP2 1357 aaKnown RBP14.65□□□□□ -0.06
CLN3-248ENST00000636355 DISP3Q9P2K9 1392 aa14.65□□□□□ -0.06
CLN3-248ENST00000636355 PLEKHG1Q9ULL1 1385 aa14.65□□□□□ -0.06
CLN3-248ENST00000636355 MIER1Q8N108 512 aa14.65□□□□□ -0.06
CLN3-248ENST00000636355 TECPR2O15040 1411 aa14.65□□□□□ -0.06
CLN3-248ENST00000636355 ANP32CO43423 234 aa14.64□□□□□ -0.07
CLN3-248ENST00000636355 YTHDC2Q9H6S0 1430 aaKnown RBP14.64□□□□□ -0.07
CLN3-248ENST00000636355 CENPJQ9HC77 1338 aaPredicted RBP14.64□□□□□ -0.07
CLN3-248ENST00000636355 CCER2I3L3R5 266 aa14.63□□□□□ -0.07
CLN3-248ENST00000636355 LRPPRCP42704 1394 aaKnown RBP14.61□□□□□ -0.07
CLN3-248ENST00000636355 PUS7Q96PZ0 661 aaKnown RBP14.61□□□□□ -0.07
CLN3-248ENST00000636355 MED14O60244 1454 aa14.61□□□□□ -0.07
CLN3-248ENST00000636355 USP32Q8NFA0 1604 aa14.6□□□□□ -0.07
CLN3-248ENST00000636355 ADGRB2O60241 1585 aa14.6□□□□□ -0.07
CLN3-248ENST00000636355 NINLQ9Y2I6 1382 aa14.6□□□□□ -0.07
CLN3-248ENST00000636355 FAM135BQ49AJ0 1406 aa14.59□□□□□ -0.07
CLN3-248ENST00000636355 TULP4Q9NRJ4 1543 aa14.59□□□□□ -0.07
CLN3-248ENST00000636355 ABCC11Q96J66 1382 aa14.59□□□□□ -0.07
CLN3-248ENST00000636355 SOCS7O14512 581 aa14.58□□□□□ -0.08
CLN3-248ENST00000636355 THEMISQ8N1K5 641 aaPredicted RBP14.58□□□□□ -0.08
CLN3-248ENST00000636355 ADAMTS13Q76LX8 1427 aa14.58□□□□□ -0.08
CLN3-248ENST00000636355 XRN1Q8IZH2 1706 aaKnown RBP14.57□□□□□ -0.08
CLN3-248ENST00000636355 EID1Q9Y6B2 187 aa14.56□□□□□ -0.08
CLN3-248ENST00000636355 PIK3R4Q99570 1358 aa14.55□□□□□ -0.08
CLN3-248ENST00000636355 NPC1L1Q9UHC9 1359 aa14.55□□□□□ -0.08
CLN3-248ENST00000636355 PTCH1Q13635 1447 aa14.55□□□□□ -0.08
CLN3-248ENST00000636355 CEBPAP49715 358 aaPredicted RBP14.54□□□□□ -0.08
CLN3-248ENST00000636355 SIRT1Q96EB6 747 aa14.54□□□□□ -0.08
CLN3-248ENST00000636355 PRKRIP1Q9H875 184 aaPredicted RBP14.53□□□□□ -0.08
CLN3-248ENST00000636355 ATAD2Q6PL18 1390 aa14.52□□□□□ -0.08
CLN3-248ENST00000636355 EVC2Q86UK5 1308 aa14.52□□□□□ -0.08
CLN3-248ENST00000636355 NUTM2DQ5VT03 806 aaPredicted RBP14.52□□□□□ -0.09
CLN3-248ENST00000636355 TMEM132EQ6IEE7 984 aa14.52□□□□□ -0.09
CLN3-248ENST00000636355 ILDR2Q71H61 639 aa14.52□□□□□ -0.09
CLN3-248ENST00000636355 TRAK1Q9UPV9 953 aa14.52□□□□□ -0.09
CLN3-248ENST00000636355 PARD3Q8TEW0 1356 aa14.5□□□□□ -0.09
CLN3-248ENST00000636355 METP08581 1390 aa14.49□□□□□ -0.09
CLN3-248ENST00000636355 CHD2O14647 1828 aaKnown RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms