RNA–Protein interactions for RNA: ENST00000635997.1

NEDD4L-238, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, human

TSL 5 BASIC

Gene NEDD4L, Length 4,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4L-238	ENST00000635997	BECN1	Q14457	450 aa		18.23	■□□□□ 0.51
NEDD4L-238	ENST00000635997	SLC4A10	Q6U841	1118 aa		18.23	■□□□□ 0.51
NEDD4L-238	ENST00000635997	RAPGEF4	Q8WZA2	1011 aa		18.23	■□□□□ 0.51
NEDD4L-238	ENST00000635997	SMC4	Q9NTJ3	1288 aa		18.23	■□□□□ 0.51
NEDD4L-238	ENST00000635997	AMOTL2	Q9Y2J4	779 aa		18.23	■□□□□ 0.51
NEDD4L-238	ENST00000635997	NOP58	Q9Y2X3	529 aa	Known RBP	18.22	■□□□□ 0.51
NEDD4L-238	ENST00000635997	HECW1	Q76N89	1606 aa		18.21	■□□□□ 0.51
NEDD4L-238	ENST00000635997	PRAM1	Q96QH2	718 aa		18.21	■□□□□ 0.51
NEDD4L-238	ENST00000635997	FOXO3	O43524	673 aa		18.21	■□□□□ 0.51
NEDD4L-238	ENST00000635997	KCNJ4	P48050	445 aa		18.21	■□□□□ 0.51
NEDD4L-238	ENST00000635997	APAF1	O14727	1248 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	TCERG1	O14776	1098 aa	Known RBP	18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	ANO8	Q9HCE9	1232 aa	Predicted RBP	18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	CABP2	Q9NPB3	220 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	ATP10B	O94823	1461 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	MSH6	P52701	1360 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	NCL	P19338	710 aa	Known RBP	18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	PLIN1	O60240	522 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	GLIPR1L2	Q4G1C9	344 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	TOM1L2	Q6ZVM7	507 aa		18.2	■□□□□ 0.5
NEDD4L-238	ENST00000635997	GGNBP2	Q9H3C7	697 aa		18.19	■□□□□ 0.5
NEDD4L-238	ENST00000635997	UHRF1BP1	Q6BDS2	1440 aa		18.19	■□□□□ 0.5
NEDD4L-238	ENST00000635997	C1orf141	Q5JVX7	400 aa		18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997	CASC1	Q6TDU7	716 aa		18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997	SPRYD3	Q8NCJ5	442 aa		18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997		G3V3G9	751 aa		18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997	IPO8	O15397	1037 aa	Known RBP	18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997	DCAF8	Q5TAQ9	597 aa		18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997	NAP1L2	Q9ULW6	460 aa	Predicted RBP	18.18	■□□□□ 0.5
NEDD4L-238	ENST00000635997	CENPJ	Q9HC77	1338 aa	Predicted RBP	18.17	■□□□□ 0.5
NEDD4L-238	ENST00000635997	FGD1	P98174	961 aa		18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	KIF7	Q2M1P5	1343 aa		18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	STAC3	Q96MF2	364 aa		18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	CHMP4B	Q9H444	224 aa	Known RBP	18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	CGNL1	Q0VF96	1302 aa		18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	STK31	Q9BXU1	1019 aa		18.16	■□□□□ 0.5
NEDD4L-238	ENST00000635997	ZC3H6	P61129	1189 aa	Known RBP	18.15	■□□□□ 0.5
NEDD4L-238	ENST00000635997	C8orf37	Q96NL8	207 aa		18.15	■□□□□ 0.5
NEDD4L-238	ENST00000635997	CEP170	Q5SW79	1584 aa		18.14	■□□□□ 0.49
NEDD4L-238	ENST00000635997	PLCH2	O75038	1416 aa		18.14	■□□□□ 0.49
NEDD4L-238	ENST00000635997	NBPF8	Q3BBV2	869 aa		18.14	■□□□□ 0.49
NEDD4L-238	ENST00000635997	FAM135A	Q9P2D6	1515 aa		18.14	■□□□□ 0.49
NEDD4L-238	ENST00000635997	DDRGK1	Q96HY6	314 aa		18.14	■□□□□ 0.49
NEDD4L-238	ENST00000635997	CHMP3	Q9Y3E7	222 aa		18.13	■□□□□ 0.49
NEDD4L-238	ENST00000635997	CALD1	Q05682	793 aa	Known RBP	18.12	■□□□□ 0.49
NEDD4L-238	ENST00000635997	CCDC141	Q6ZP82	1450 aa		18.12	■□□□□ 0.49
NEDD4L-238	ENST00000635997	ADAMTS12	P58397	1594 aa		18.12	■□□□□ 0.49
NEDD4L-238	ENST00000635997	DHX29	Q7Z478	1369 aa	Known RBP	18.11	■□□□□ 0.49
NEDD4L-238	ENST00000635997	NECTIN2	Q92692	538 aa		18.11	■□□□□ 0.49
NEDD4L-238	ENST00000635997	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	18.11	■□□□□ 0.49	2e-19	■■■■■ 288.6
NEDD4L-238	ENST00000635997	HMOX1	P09601	288 aa		18.11	■□□□□ 0.49
NEDD4L-238	ENST00000635997	NGEF	Q8N5V2	710 aa		18.1	■□□□□ 0.49
NEDD4L-238	ENST00000635997	TEF	Q10587	303 aa		18.09	■□□□□ 0.49
NEDD4L-238	ENST00000635997	ZMYM3	Q14202	1370 aa		18.09	■□□□□ 0.49
NEDD4L-238	ENST00000635997	BIVM-ERCC5	R4GMW8	1640 aa		18.09	■□□□□ 0.49
NEDD4L-238	ENST00000635997	MIA2	Q96PC5	1412 aa		18.09	■□□□□ 0.49
NEDD4L-238	ENST00000635997	WASHC2A	Q641Q2	1341 aa		18.08	■□□□□ 0.49
NEDD4L-238	ENST00000635997	TTC5	Q8N0Z6	440 aa		18.08	■□□□□ 0.48
NEDD4L-238	ENST00000635997	ZNF518A	Q6AHZ1	1483 aa		18.08	■□□□□ 0.48
NEDD4L-238	ENST00000635997	DDX54	Q8TDD1	881 aa	Known RBP	18.07	■□□□□ 0.48
NEDD4L-238	ENST00000635997	SLC12A5	Q9H2X9	1139 aa		18.07	■□□□□ 0.48
NEDD4L-238	ENST00000635997	KIF14	Q15058	1648 aa		18.07	■□□□□ 0.48
NEDD4L-238	ENST00000635997	TULP1	O00294	542 aa	Predicted RBP	18.07	■□□□□ 0.48
NEDD4L-238	ENST00000635997	TIAM1	Q13009	1591 aa		18.07	■□□□□ 0.48
NEDD4L-238	ENST00000635997	RPGRIP1L	Q68CZ1	1315 aa		18.06	■□□□□ 0.48
NEDD4L-238	ENST00000635997	EHBP1L1	Q8N3D4	1523 aa		18.06	■□□□□ 0.48
NEDD4L-238	ENST00000635997	DIAPH1	O60610	1272 aa	Known RBP	18.05	■□□□□ 0.48
NEDD4L-238	ENST00000635997	HSP90AB1	P08238	724 aa	Known RBP	18.05	■□□□□ 0.48
NEDD4L-238	ENST00000635997	EIF2S2	P20042	333 aa	Known RBP	18.05	■□□□□ 0.48
NEDD4L-238	ENST00000635997	PHF8	Q9UPP1	1060 aa		18.05	■□□□□ 0.48
NEDD4L-238	ENST00000635997	CCDC7	Q96M83	1385 aa		18.05	■□□□□ 0.48
NEDD4L-238	ENST00000635997	WAPL	Q7Z5K2	1190 aa		18.04	■□□□□ 0.48
NEDD4L-238	ENST00000635997	RWDD1	Q9H446	243 aa	Predicted RBP	18.03	■□□□□ 0.48
NEDD4L-238	ENST00000635997	GOLGA6L22	H0YM25	854 aa		18.03	■□□□□ 0.48
NEDD4L-238	ENST00000635997	COG6	Q9Y2V7	657 aa		18.03	■□□□□ 0.48
NEDD4L-238	ENST00000635997	UHRF1BP1L	A0JNW5	1464 aa		18.02	■□□□□ 0.48
NEDD4L-238	ENST00000635997	RIPK4	P57078	832 aa		18.02	■□□□□ 0.48
NEDD4L-238	ENST00000635997	MTHFS	P49914	203 aa		18.02	■□□□□ 0.47
NEDD4L-238	ENST00000635997	C19orf44	Q9H6X5	657 aa		18.02	■□□□□ 0.47
NEDD4L-238	ENST00000635997	THOC2	Q8NI27	1593 aa	Known RBP	18.01	■□□□□ 0.47
NEDD4L-238	ENST00000635997	CDK19	Q9BWU1	502 aa		18.01	■□□□□ 0.47
NEDD4L-238	ENST00000635997	CHMP4A	Q9BY43	222 aa		18.01	■□□□□ 0.47
NEDD4L-238	ENST00000635997	A2M	P01023	1474 aa		18.01	■□□□□ 0.47
NEDD4L-238	ENST00000635997	LMOD3	Q0VAK6	560 aa		18	■□□□□ 0.47
NEDD4L-238	ENST00000635997	KRT28	Q7Z3Y7	464 aa		18	■□□□□ 0.47
NEDD4L-238	ENST00000635997	ERBIN	Q96RT1	1412 aa		18	■□□□□ 0.47
NEDD4L-238	ENST00000635997	EXOC6	Q8TAG9	804 aa		18	■□□□□ 0.47
NEDD4L-238	ENST00000635997	LRRC59	Q96AG4	307 aa	Known RBP	17.99	■□□□□ 0.47
NEDD4L-238	ENST00000635997	CNTLN	Q9NXG0	1405 aa		17.99	■□□□□ 0.47
NEDD4L-238	ENST00000635997	LRPPRC	P42704	1394 aa	Known RBP	17.99	■□□□□ 0.47
NEDD4L-238	ENST00000635997	ABCC10	Q5T3U5	1492 aa		17.99	■□□□□ 0.47
NEDD4L-238	ENST00000635997	ADAMTS8	Q9UP79	889 aa		17.98	■□□□□ 0.47
NEDD4L-238	ENST00000635997	TAF7L	Q5H9L4	462 aa		17.97	■□□□□ 0.47
NEDD4L-238	ENST00000635997	ISY1	Q9ULR0	285 aa	Known RBP	17.97	■□□□□ 0.47
NEDD4L-238	ENST00000635997	GORAB	Q5T7V8	394 aa		17.97	■□□□□ 0.47
NEDD4L-238	ENST00000635997	CABP1	Q9NZU7	370 aa		17.97	■□□□□ 0.47
NEDD4L-238	ENST00000635997	ATP10A	O60312	1499 aa		17.97	■□□□□ 0.47
NEDD4L-238	ENST00000635997	RTEL1-TNFRSF6B	F6WH68	1400 aa		17.97	■□□□□ 0.47
NEDD4L-238	ENST00000635997	TRIM6-TRIM34	B2RNG4	842 aa		17.97	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms