RNA–Protein interactions for RNA: ENST00000634348.1

SRSF4-208, Transcript of serine and arginine rich splicing factor 4, human

TSL 5

Gene SRSF4, Length 8,128 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRSF4-208	ENST00000634348	GOLGA6L10	A6NI86	522 aa		13.77	□□□□□ -0.21
SRSF4-208	ENST00000634348	ROCK2	O75116	1388 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	KRI1	Q8N9T8	703 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	PMFBP1	Q8TBY8	1022 aa		13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.76	□□□□□ -0.21	1e-6	■■■■■ 29.4
SRSF4-208	ENST00000634348	SSR1	P43307	286 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	IRX3	P78415	501 aa	Predicted RBP	13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	MCTP1	Q6DN14	999 aa		13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	DHX37	Q8IY37	1157 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-208	ENST00000634348	SPAG9	O60271	1321 aa	Known RBP	13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	SPATA24	Q86W54	205 aa		13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	IPO4	Q8TEX9	1081 aa	Known RBP	13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	KANK1	Q14678	1352 aa		13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	EIF4G1	Q04637	1599 aa	Known RBP	13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	NECTIN2	Q92692	538 aa		13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	TNNT1	P13805	278 aa		13.75	□□□□□ -0.21
SRSF4-208	ENST00000634348	ERICH4	A6NGS2	130 aa		13.74	□□□□□ -0.21
SRSF4-208	ENST00000634348	DDX11	Q96FC9	970 aa		13.74	□□□□□ -0.21
SRSF4-208	ENST00000634348	HOOK1	Q9UJC3	728 aa	Known RBP	13.74	□□□□□ -0.21
SRSF4-208	ENST00000634348	ANKRD45	Q5TZF3	282 aa		13.73	□□□□□ -0.21
SRSF4-208	ENST00000634348	FOSB	P53539	338 aa		13.73	□□□□□ -0.21
SRSF4-208	ENST00000634348	ODF2	Q5BJF6	829 aa		13.73	□□□□□ -0.21
SRSF4-208	ENST00000634348	EIF3J	O75822	258 aa	Known RBP	13.73	□□□□□ -0.21
SRSF4-208	ENST00000634348	HSP90AB2P	Q58FF8	381 aa		13.73	□□□□□ -0.21
SRSF4-208	ENST00000634348	CCER2	I3L3R5	266 aa		13.73	□□□□□ -0.21
SRSF4-208	ENST00000634348	HDGF	P51858	240 aa	Known RBP	13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	ENOX2	Q16206	610 aa	Known RBP	13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	CHMP4C	Q96CF2	233 aa		13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	EZR	P15311	586 aa	Known RBP	13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	ANKRD18A	Q8IVF6	992 aa		13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	UBE2Q2	Q8WVN8	375 aa		13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	AMPH	P49418	695 aa		13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	NGDN	Q8NEJ9	315 aa	Known RBP	13.72	□□□□□ -0.21
SRSF4-208	ENST00000634348	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.71	□□□□□ -0.21
SRSF4-208	ENST00000634348	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.71	□□□□□ -0.21
SRSF4-208	ENST00000634348	FAM184A	Q8NB25	1140 aa		13.71	□□□□□ -0.21
SRSF4-208	ENST00000634348	CALCOCO1	Q9P1Z2	691 aa		13.71	□□□□□ -0.21
SRSF4-208	ENST00000634348	SEPT7	Q16181	437 aa	Known RBP	13.71	□□□□□ -0.21
SRSF4-208	ENST00000634348	GOLGA6L10	A0A0M3HER8	536 aa		13.71	□□□□□ -0.22
SRSF4-208	ENST00000634348	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	ERLIN2	O94905	339 aa		13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	BBX	Q8WY36	941 aa	Predicted RBP	13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	CCDC180	Q9P1Z9	1646 aa		13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	CCP110	O43303	1012 aa		13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	NASP	P49321	788 aa	Predicted RBP	13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	MRE11	P49959	708 aa		13.7	□□□□□ -0.22
SRSF4-208	ENST00000634348	SASS6	Q6UVJ0	657 aa		13.69	□□□□□ -0.22
SRSF4-208	ENST00000634348	CCDC47	Q96A33	483 aa	Known RBP	13.69	□□□□□ -0.22
SRSF4-208	ENST00000634348	CFAP57	Q96MR6	1250 aa		13.69	□□□□□ -0.22
SRSF4-208	ENST00000634348	MSH5	O43196	834 aa		13.69	□□□□□ -0.22
SRSF4-208	ENST00000634348	TMCO5B	A8MYB1	307 aa		13.68	□□□□□ -0.22
SRSF4-208	ENST00000634348	ANKRD62	A6NC57	917 aa		13.68	□□□□□ -0.22
SRSF4-208	ENST00000634348	GTF2A1	P52655	376 aa	Predicted RBP	13.67	□□□□□ -0.22
SRSF4-208	ENST00000634348	TRAK1	Q9UPV9	953 aa		13.67	□□□□□ -0.22
SRSF4-208	ENST00000634348	FANCI	Q9NVI1	1328 aa		13.67	□□□□□ -0.22
SRSF4-208	ENST00000634348	CEP63	Q96MT8	703 aa		13.67	□□□□□ -0.22
SRSF4-208	ENST00000634348	KDM4A	O75164	1064 aa		13.67	□□□□□ -0.22
SRSF4-208	ENST00000634348	KANK4	Q5T7N3	995 aa	Predicted RBP	13.67	□□□□□ -0.22
SRSF4-208	ENST00000634348	SETSIP	P0DME0	302 aa		13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348	RABEP1	Q15276	862 aa		13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348	EIF2S2	P20042	333 aa	Known RBP	13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348		E9PSI1	815 aa		13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348	CHMP4A	Q9BY43	222 aa		13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348	KIF27	Q86VH2	1401 aa		13.66	□□□□□ -0.22
SRSF4-208	ENST00000634348	PAIP2	Q9BPZ3	127 aa	Known RBP	13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	MPHOSPH9	Q99550	1183 aa		13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	CCDC175	P0C221	793 aa		13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	FAM107B	Q9H098	131 aa		13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	UQCRHL	A0A096LP55	91 aa		13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	ERLIN1	O75477	346 aa		13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	UQCRH	P07919	91 aa		13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	AKAP17A	Q02040	695 aa	Known RBP	13.65	□□□□□ -0.22
SRSF4-208	ENST00000634348	PDIA4	P13667	645 aa	Known RBP	13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	COG6	Q9Y2V7	657 aa		13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	SEPT6	Q14141	434 aa		13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	NAT10	Q9H0A0	1025 aa	Known RBP	13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	CGN	Q9P2M7	1197 aa	Known RBP	13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	NUP155	O75694	1391 aa		13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	RNF20	Q5VTR2	975 aa		13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	EXOC6	Q8TAG9	804 aa		13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	SLC26A8	Q96RN1	970 aa		13.64	□□□□□ -0.23
SRSF4-208	ENST00000634348	ERCC6	Q03468	1493 aa		13.63	□□□□□ -0.23
SRSF4-208	ENST00000634348	CAVIN1	Q6NZI2	390 aa	Known RBP	13.63	□□□□□ -0.23
SRSF4-208	ENST00000634348	PPM1E	Q8WY54	764 aa		13.63	□□□□□ -0.23
SRSF4-208	ENST00000634348	DHX16	O60231	1041 aa	Known RBP	13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	RBM33	Q96EV2	1170 aa	Known RBP	13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	DNAJC2	Q99543	621 aa	Known RBP	13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	PDCL2	Q8N4E4	241 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	CRBN	Q96SW2	442 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	KIF3B	O15066	747 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	PDE4A	P27815	886 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	SETD5	Q9C0A6	1442 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	EEA1	Q15075	1411 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	SHTN1	A0MZ66	631 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	BICD2	Q8TD16	824 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	LRRCC1	Q9C099	1032 aa		13.62	□□□□□ -0.23
SRSF4-208	ENST00000634348	SYTL4	Q96C24	671 aa	Predicted RBP	13.61	□□□□□ -0.23
SRSF4-208	ENST00000634348	TNIK	Q9UKE5	1360 aa		13.61	□□□□□ -0.23
SRSF4-208	ENST00000634348	TCEAL9	Q9UHQ7	104 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms