RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 USP19O94966 1318 aa18.26■□□□□ 0.51
LDB3-209ENST00000623056 VIRMAQ69YN4 1812 aaKnown RBP18.26■□□□□ 0.51
LDB3-209ENST00000623056 HNRNPMP52272 730 aaKnown RBP eCLIP18.26■□□□□ 0.51
LDB3-209ENST00000623056 SLFN5Q08AF3 891 aa18.26■□□□□ 0.51
LDB3-209ENST00000623056 PLA2R1Q13018 1463 aa18.25■□□□□ 0.51
LDB3-209ENST00000623056 ARHGEF5Q12774 1597 aa18.25■□□□□ 0.51
LDB3-209ENST00000623056 TTC37Q6PGP7 1564 aa18.25■□□□□ 0.51
LDB3-209ENST00000623056 POGKQ9P215 609 aa18.24■□□□□ 0.51
LDB3-209ENST00000623056 MAGI2Q86UL8 1455 aa18.24■□□□□ 0.51
LDB3-209ENST00000623056 EIF2AK4Q9P2K8 1649 aaKnown RBP18.24■□□□□ 0.51
LDB3-209ENST00000623056 TRMT2AQ8IZ69 625 aaKnown RBP18.23■□□□□ 0.51
LDB3-209ENST00000623056 ZCCHC11Q5TAX3 1644 aaKnown RBP18.23■□□□□ 0.51
LDB3-209ENST00000623056 MYO5CQ9NQX4 1742 aa18.22■□□□□ 0.51
LDB3-209ENST00000623056 WDR7Q9Y4E6 1490 aa18.22■□□□□ 0.51
LDB3-209ENST00000623056 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.22■□□□□ 0.51
LDB3-209ENST00000623056 KNSTRNQ9Y448 316 aa18.22■□□□□ 0.51
LDB3-209ENST00000623056 CDC42BPBQ9Y5S2 1711 aa18.21■□□□□ 0.51
LDB3-209ENST00000623056 PREX2Q70Z35 1606 aa18.21■□□□□ 0.51
LDB3-209ENST00000623056 CCDC141Q6ZP82 1450 aa18.21■□□□□ 0.51
LDB3-209ENST00000623056 SAMD9LQ8IVG5 1584 aa18.2■□□□□ 0.5
LDB3-209ENST00000623056 IGHDP01880 384 aa18.2■□□□□ 0.5
LDB3-209ENST00000623056 BCAR3O75815 825 aa18.2■□□□□ 0.5
LDB3-209ENST00000623056 AMER1Q5JTC6 1135 aaPredicted RBP18.2■□□□□ 0.5
LDB3-209ENST00000623056 SPINK5Q9NQ38 1064 aaPredicted RBP18.2■□□□□ 0.5
LDB3-209ENST00000623056 NKTRP30414 1462 aaKnown RBP18.19■□□□□ 0.5
LDB3-209ENST00000623056 SEC24BO95487 1268 aa18.19■□□□□ 0.5
LDB3-209ENST00000623056 UHRF1BP1LA0JNW5 1464 aa18.19■□□□□ 0.5
LDB3-209ENST00000623056 BECN1Q14457 450 aa18.18■□□□□ 0.5
LDB3-209ENST00000623056 ARHGAP5Q13017 1502 aa18.18■□□□□ 0.5
LDB3-209ENST00000623056 CCDC146Q8IYE0 955 aa18.18■□□□□ 0.5
LDB3-209ENST00000623056 RNF17Q9BXT8 1623 aaKnown RBP18.17■□□□□ 0.5
LDB3-209ENST00000623056 PIK3C2GO75747 1445 aa18.17■□□□□ 0.5
LDB3-209ENST00000623056 SLKQ9H2G2 1235 aaPredicted RBP18.17■□□□□ 0.5
LDB3-209ENST00000623056 UNC13BO14795 1591 aa18.17■□□□□ 0.5
LDB3-209ENST00000623056 RRAGDQ9NQL2 400 aaPredicted RBP18.16■□□□□ 0.5
LDB3-209ENST00000623056 MAPK8IP3Q9UPT6 1336 aa18.16■□□□□ 0.5
LDB3-209ENST00000623056 NLRP1Q9C000 1473 aa18.16■□□□□ 0.5
LDB3-209ENST00000623056 L1TD1Q5T7N2 865 aaKnown RBP18.15■□□□□ 0.5
LDB3-209ENST00000623056 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.15■□□□□ 0.5
LDB3-209ENST00000623056 SYCP2Q9BX26 1530 aa18.14■□□□□ 0.49
LDB3-209ENST00000623056 APAF1O14727 1248 aa18.14■□□□□ 0.49
LDB3-209ENST00000623056 CGNL1Q0VF96 1302 aa18.14■□□□□ 0.49
LDB3-209ENST00000623056 ANTXR1Q9H6X2 564 aa18.14■□□□□ 0.49
LDB3-209ENST00000623056 ASXL1Q8IXJ9 1541 aa18.13■□□□□ 0.49
LDB3-209ENST00000623056 SYNMO15061 1565 aa18.13■□□□□ 0.49
LDB3-209ENST00000623056 E9PSI1 815 aa18.12■□□□□ 0.49
LDB3-209ENST00000623056 CLUAP1Q96AJ1 413 aa18.12■□□□□ 0.49
LDB3-209ENST00000623056 PDE3AQ14432 1141 aa18.11■□□□□ 0.49
LDB3-209ENST00000623056 IQGAP3Q86VI3 1631 aa18.1■□□□□ 0.49
LDB3-209ENST00000623056 DMRT2Q9Y5R5 561 aa18.1■□□□□ 0.49
LDB3-209ENST00000623056 RSPH4AQ5TD94 716 aa18.09■□□□□ 0.49
LDB3-209ENST00000623056 ATP10AO60312 1499 aa18.09■□□□□ 0.49
LDB3-209ENST00000623056 NINLQ9Y2I6 1382 aa18.09■□□□□ 0.49
LDB3-209ENST00000623056 IQGAP1P46940 1657 aa18.09■□□□□ 0.49
LDB3-209ENST00000623056 PANK1Q8TE04 598 aa18.08■□□□□ 0.48
LDB3-209ENST00000623056 COG6Q9Y2V7 657 aa18.08■□□□□ 0.48
LDB3-209ENST00000623056 NPC1L1Q9UHC9 1359 aa18.08■□□□□ 0.48
LDB3-209ENST00000623056 CDCA8Q53HL2 280 aa18.07■□□□□ 0.48
LDB3-209ENST00000623056 CENPJQ9HC77 1338 aaPredicted RBP18.07■□□□□ 0.48
LDB3-209ENST00000623056 CANXP27824 592 aaKnown RBP18.06■□□□□ 0.48
LDB3-209ENST00000623056 PLCH2O75038 1416 aa18.06■□□□□ 0.48
LDB3-209ENST00000623056 TBC1D32Q96NH3 1257 aa18.06■□□□□ 0.48
LDB3-209ENST00000623056 PLXNC1O60486 1568 aa18.05■□□□□ 0.48
LDB3-209ENST00000623056 MAST1Q9Y2H9 1570 aa18.05■□□□□ 0.48
LDB3-209ENST00000623056 TBC1D2Q9BYX2 928 aa18.05■□□□□ 0.48
LDB3-209ENST00000623056 MADDQ8WXG6 1647 aa18.05■□□□□ 0.48
LDB3-209ENST00000623056 MYOM1P52179 1685 aa18.05■□□□□ 0.48
LDB3-209ENST00000623056 CYB5RLQ6IPT4 315 aa18.05■□□□□ 0.48
LDB3-209ENST00000623056 UPF2Q9HAU5 1272 aaKnown RBP18.05■□□□□ 0.48
LDB3-209ENST00000623056 XRCC6P12956 609 aaKnown RBP eCLIP18.04■□□□□ 0.48
LDB3-209ENST00000623056 FSD2A1L4K1 749 aa18.03■□□□□ 0.48
LDB3-209ENST00000623056 GOLGA6L3A6NEY3 463 aa18.03■□□□□ 0.48
LDB3-209ENST00000623056 NGEFQ8N5V2 710 aa18.03■□□□□ 0.48
LDB3-209ENST00000623056 ARXQ96QS3 562 aa18.03■□□□□ 0.48
LDB3-209ENST00000623056 EFCAB2Q5VUJ9 269 aa18.02■□□□□ 0.48
LDB3-209ENST00000623056 SCAF11Q99590 1463 aaKnown RBP18.02■□□□□ 0.47
LDB3-209ENST00000623056 PMFBP1Q8TBY8 1022 aa18.01■□□□□ 0.47
LDB3-209ENST00000623056 ZMYM3Q14202 1370 aa18.01■□□□□ 0.47
LDB3-209ENST00000623056 MCM4P33991 863 aa18■□□□□ 0.47
LDB3-209ENST00000623056 ASXL2Q76L83 1435 aa17.99■□□□□ 0.47
LDB3-209ENST00000623056 WWC1Q8IX03 1113 aa17.99■□□□□ 0.47
LDB3-209ENST00000623056 PCDHB15Q9Y5E8 787 aa17.99■□□□□ 0.47
LDB3-209ENST00000623056 PANK2Q9BZ23 570 aa17.99■□□□□ 0.47
LDB3-209ENST00000623056 PDZRN3Q9UPQ7 1066 aa17.99■□□□□ 0.47
LDB3-209ENST00000623056 TRAPPC8Q9Y2L5 1435 aa17.98■□□□□ 0.47
LDB3-209ENST00000623056 ABCC1P33527 1531 aa17.98■□□□□ 0.47
LDB3-209ENST00000623056 SCAPERQ9BY12 1400 aa17.98■□□□□ 0.47
LDB3-209ENST00000623056 GZF1Q9H116 711 aaPredicted RBP17.98■□□□□ 0.47
LDB3-209ENST00000623056 CLCN1P35523 988 aa17.97■□□□□ 0.47
LDB3-209ENST00000623056 SPRYD3Q8NCJ5 442 aa17.97■□□□□ 0.47
LDB3-209ENST00000623056 PNNQ9H307 717 aaKnown RBP17.97■□□□□ 0.47
LDB3-209ENST00000623056 AAMPQ13685 434 aa17.97■□□□□ 0.47
LDB3-209ENST00000623056 NAP1L5Q96NT1 182 aaPredicted RBP17.97■□□□□ 0.47
LDB3-209ENST00000623056 DUOX2Q9NRD8 1548 aa17.96■□□□□ 0.47
LDB3-209ENST00000623056 RARSP54136 660 aaKnown RBP17.96■□□□□ 0.47
LDB3-209ENST00000623056 KDM5AP29375 1690 aaKnown RBP17.96■□□□□ 0.47
LDB3-209ENST00000623056 RLBP1P12271 317 aa17.95■□□□□ 0.46
LDB3-209ENST00000623056 SPHKAPQ2M3C7 1700 aa17.95■□□□□ 0.46
LDB3-209ENST00000623056 AFAP1Q8N556 730 aa17.94■□□□□ 0.46
LDB3-209ENST00000623056 TNNQ9UQP3 1299 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms