RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 ANKRD20A12PQ8NF67 263 aa18.61■□□□□ 0.57
PDLIM2-220ENST00000622226 RAD21O60216 631 aa18.6■□□□□ 0.57
PDLIM2-220ENST00000622226 PDILTQ8N807 584 aa18.6■□□□□ 0.57
PDLIM2-220ENST00000622226 ANO2Q9NQ90 1003 aa18.6■□□□□ 0.57
PDLIM2-220ENST00000622226 DCAF8L1A6NGE4 600 aa18.59■□□□□ 0.57
PDLIM2-220ENST00000622226 CAGE1Q8TC20 777 aa18.58■□□□□ 0.56
PDLIM2-220ENST00000622226 PKD2Q13563 968 aa18.57■□□□□ 0.56
PDLIM2-220ENST00000622226 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.57■□□□□ 0.56
PDLIM2-220ENST00000622226 RRP1P56182 461 aaKnown RBP18.57■□□□□ 0.56
PDLIM2-220ENST00000622226 PIP4K2BP78356 416 aa18.57■□□□□ 0.56
PDLIM2-220ENST00000622226 TRIM29Q14134 588 aa18.57■□□□□ 0.56
PDLIM2-220ENST00000622226 CCDC39Q9UFE4 941 aa18.57■□□□□ 0.56
PDLIM2-220ENST00000622226 KIF3BO15066 747 aa18.56■□□□□ 0.56
PDLIM2-220ENST00000622226 DCTN1Q14203 1278 aa18.55■□□□□ 0.56
PDLIM2-220ENST00000622226 SYNE3Q6ZMZ3 975 aa18.55■□□□□ 0.56
PDLIM2-220ENST00000622226 NGEFQ8N5V2 710 aa18.55■□□□□ 0.56
PDLIM2-220ENST00000622226 MTERF4Q7Z6M4 381 aaKnown RBP18.55■□□□□ 0.56
PDLIM2-220ENST00000622226 AXDND1Q5T1B0 1012 aaPredicted RBP18.55■□□□□ 0.56
PDLIM2-220ENST00000622226 LEKR1Q6ZMV7 388 aa18.55■□□□□ 0.56
PDLIM2-220ENST00000622226 MPNDQ8N594 471 aa18.54■□□□□ 0.56
PDLIM2-220ENST00000622226 PDE3BQ13370 1112 aa18.54■□□□□ 0.56
PDLIM2-220ENST00000622226 MRE11P49959 708 aa18.53■□□□□ 0.56
PDLIM2-220ENST00000622226 CT47A1Q5JQC4 288 aaPredicted RBP18.53■□□□□ 0.56
PDLIM2-220ENST00000622226 CPLX1O14810 134 aa18.53■□□□□ 0.56
PDLIM2-220ENST00000622226 HNRNPMP52272 730 aaKnown RBP eCLIP18.52■□□□□ 0.56
PDLIM2-220ENST00000622226 HDAC5Q9UQL6 1122 aa18.52■□□□□ 0.56
PDLIM2-220ENST00000622226 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.52■□□□□ 0.56
PDLIM2-220ENST00000622226 SMC3Q9UQE7 1217 aa18.52■□□□□ 0.55
PDLIM2-220ENST00000622226 NLRP13Q86W25 1043 aa18.51■□□□□ 0.55
PDLIM2-220ENST00000622226 CCDC47Q96A33 483 aaKnown RBP18.51■□□□□ 0.55
PDLIM2-220ENST00000622226 SETD5Q9C0A6 1442 aa18.51■□□□□ 0.55
PDLIM2-220ENST00000622226 ZFYVE27Q5T4F4 411 aa18.51■□□□□ 0.55
PDLIM2-220ENST00000622226 HSP90AB2PQ58FF8 381 aa18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 TCEAL9Q9UHQ7 104 aa18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 KDM4AO75164 1064 aa18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 CAVIN1Q6NZI2 390 aaKnown RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 NUTM2BA6NNL0 878 aaPredicted RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 NUTM2EB1AL46 878 aaPredicted RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 NUTM2AQ8IVF1 878 aaPredicted RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 HOOK1Q9UJC3 728 aaKnown RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 WASHC2CQ9Y4E1 1318 aa18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 ZKSCAN1P17029 563 aaPredicted RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 CPLX2Q6PUV4 134 aaKnown RBP18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 SPC24Q8NBT2 197 aa18.5■□□□□ 0.55
PDLIM2-220ENST00000622226 ERICH4A6NGS2 130 aa18.49■□□□□ 0.55
PDLIM2-220ENST00000622226 REC8O95072 547 aa18.49■□□□□ 0.55
PDLIM2-220ENST00000622226 SAMD1Q6SPF0 538 aaPredicted RBP18.49■□□□□ 0.55
PDLIM2-220ENST00000622226 TDRD9Q8NDG6 1382 aaKnown RBP18.49■□□□□ 0.55
PDLIM2-220ENST00000622226 CCDC73Q6ZRK6 1079 aa18.49■□□□□ 0.55
PDLIM2-220ENST00000622226 TRIM5Q9C035 493 aa18.48■□□□□ 0.55
PDLIM2-220ENST00000622226 ODF2Q5BJF6 829 aa18.48■□□□□ 0.55
PDLIM2-220ENST00000622226 ZKSCAN2Q63HK3 967 aa18.48■□□□□ 0.55
PDLIM2-220ENST00000622226 DHX16O60231 1041 aaKnown RBP18.48■□□□□ 0.55
PDLIM2-220ENST00000622226 CGNL1Q0VF96 1302 aa18.47■□□□□ 0.55
PDLIM2-220ENST00000622226 TRAK2O60296 914 aa18.47■□□□□ 0.55
PDLIM2-220ENST00000622226 CCDC27Q2M243 656 aa18.47■□□□□ 0.55
PDLIM2-220ENST00000622226 TNIKQ9UKE5 1360 aa18.47■□□□□ 0.55
PDLIM2-220ENST00000622226 NUCB2P80303 420 aa18.47■□□□□ 0.55
PDLIM2-220ENST00000622226 FAM69CQ0P6D2 419 aa18.47■□□□□ 0.55
PDLIM2-220ENST00000622226 ERCC4Q92889 916 aaPredicted RBP18.46■□□□□ 0.55
PDLIM2-220ENST00000622226 KIF27Q86VH2 1401 aa18.46■□□□□ 0.55
PDLIM2-220ENST00000622226 CT47B1P0C2W7 299 aaPredicted RBP18.46■□□□□ 0.55
PDLIM2-220ENST00000622226 NECTIN2Q92692 538 aa18.46■□□□□ 0.55
PDLIM2-220ENST00000622226 FMNL2Q96PY5 1086 aa18.46■□□□□ 0.55
PDLIM2-220ENST00000622226 CUX2O14529 1486 aa18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 SMC2O95347 1197 aa18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 AMPHP49418 695 aa18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 NFXL1Q6ZNB6 911 aa18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 AEBP1Q8IUX7 1158 aa18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 KRI1Q8N9T8 703 aaKnown RBP18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 C22orf23Q9BZE7 217 aa18.45■□□□□ 0.54
PDLIM2-220ENST00000622226 OFD1O75665 1012 aa18.44■□□□□ 0.54
PDLIM2-220ENST00000622226 RUFY2Q8WXA3 655 aa18.44■□□□□ 0.54
PDLIM2-220ENST00000622226 CNKSR2Q8WXI2 1034 aa18.44■□□□□ 0.54
PDLIM2-220ENST00000622226 CHMP4CQ96CF2 233 aa18.44■□□□□ 0.54
PDLIM2-220ENST00000622226 CHMP4AQ9BY43 222 aa18.44■□□□□ 0.54
PDLIM2-220ENST00000622226 CCDC173Q0VFZ6 552 aa18.43■□□□□ 0.54
PDLIM2-220ENST00000622226 IBSPP21815 317 aaPredicted RBP18.43■□□□□ 0.54
PDLIM2-220ENST00000622226 PRDM10Q9NQV6 1147 aa18.43■□□□□ 0.54
PDLIM2-220ENST00000622226 EEA1Q15075 1411 aa18.43■□□□□ 0.54
PDLIM2-220ENST00000622226 CENPHQ9H3R5 247 aa18.43■□□□□ 0.54
PDLIM2-220ENST00000622226 BRPF1P55201 1214 aaPredicted RBP18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 OLFM4Q6UX06 510 aa18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 SDF4Q9BRK5 362 aa18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 LNPKQ9C0E8 428 aa18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 LMOD3Q0VAK6 560 aa18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 UQCRHLA0A096LP55 91 aa18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 UQCRHP07919 91 aa18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 WRNQ14191 1432 aaPredicted RBP eCLIP18.42■□□□□ 0.54
PDLIM2-220ENST00000622226 KIAA0754O94854 1291 aa18.41■□□□□ 0.54
PDLIM2-220ENST00000622226 NEFHP12036 1026 aa18.41■□□□□ 0.54
PDLIM2-220ENST00000622226 MPHOSPH9Q99550 1183 aa18.41■□□□□ 0.54
PDLIM2-220ENST00000622226 EPS15P42566 896 aa18.4■□□□□ 0.54
PDLIM2-220ENST00000622226 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.4■□□□□ 0.54
PDLIM2-220ENST00000622226 IFIT2P09913 472 aaKnown RBP18.39■□□□□ 0.54
PDLIM2-220ENST00000622226 FAM177A1Q8N128 213 aaPredicted RBP18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 EIF2S2P20042 333 aaKnown RBP18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 OSCARQ8IYS5 282 aa18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 NAT10Q9H0A0 1025 aaKnown RBP18.39■□□□□ 0.53
PDLIM2-220ENST00000622226 PRPF40AO75400 957 aaKnown RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms