RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 SMAPO00193 183 aa9.51□□□□□ -0.89
CPNE3-213ENST00000622183 SPTLC1O15269 473 aa9.51□□□□□ -0.89
CPNE3-213ENST00000622183 UBTFP17480 764 aaKnown RBP9.51□□□□□ -0.89
CPNE3-213ENST00000622183 RIC3Q7Z5B4 369 aa9.51□□□□□ -0.89
CPNE3-213ENST00000622183 NUTM1Q86Y26 1132 aa9.51□□□□□ -0.89
CPNE3-213ENST00000622183 GJA5P36382 358 aa9.5□□□□□ -0.89
CPNE3-213ENST00000622183 PPP2R2DQ66LE6 453 aa9.5□□□□□ -0.89
CPNE3-213ENST00000622183 SLC4A5Q9BY07 1137 aa9.5□□□□□ -0.89
CPNE3-213ENST00000622183 RFC5P40937 340 aa9.49□□□□□ -0.89
CPNE3-213ENST00000622183 PSEN2P49810 448 aa9.49□□□□□ -0.89
CPNE3-213ENST00000622183 RSBN1LQ6PCB5 846 aaPredicted RBP9.49□□□□□ -0.89
CPNE3-213ENST00000622183 BANK1Q8NDB2 785 aa9.49□□□□□ -0.89
CPNE3-213ENST00000622183 SPDYE5A6NIY4 337 aa9.48□□□□□ -0.89
CPNE3-213ENST00000622183 ARHGAP33O14559 1287 aa9.48□□□□□ -0.89
CPNE3-213ENST00000622183 CLUAP1Q96AJ1 413 aa9.48□□□□□ -0.89
CPNE3-213ENST00000622183 RABGEF1Q9UJ41 708 aa9.48□□□□□ -0.89
CPNE3-213ENST00000622183 ERBB3P21860 1342 aa9.48□□□□□ -0.89
CPNE3-213ENST00000622183 MOXD2PA6NHM9 499 aa9.47□□□□□ -0.89
CPNE3-213ENST00000622183 TMEM259Q4ZIN3 620 aa9.47□□□□□ -0.89
CPNE3-213ENST00000622183 VARS2Q5ST30 1063 aaKnown RBP9.47□□□□□ -0.89
CPNE3-213ENST00000622183 RDH13Q8NBN7 331 aa9.47□□□□□ -0.89
CPNE3-213ENST00000622183 PBX2P40425 430 aa9.46□□□□□ -0.9
CPNE3-213ENST00000622183 RSPH4AQ5TD94 716 aa9.46□□□□□ -0.9
CPNE3-213ENST00000622183 FBXO31Q5XUX0 539 aaPredicted RBP9.46□□□□□ -0.9
CPNE3-213ENST00000622183 POTEEQ6S8J3 1075 aa9.46□□□□□ -0.9
CPNE3-213ENST00000622183 C1orf115Q9H7X2 142 aa9.46□□□□□ -0.9
CPNE3-213ENST00000622183 TRAK2O60296 914 aa9.45□□□□□ -0.9
CPNE3-213ENST00000622183 KDM4AO75164 1064 aa9.45□□□□□ -0.9
CPNE3-213ENST00000622183 USP46P62068 366 aa9.45□□□□□ -0.9
CPNE3-213ENST00000622183 GCGRP47871 477 aa9.44□□□□□ -0.9
CPNE3-213ENST00000622183 APBB1O00213 710 aa9.43□□□□□ -0.9
CPNE3-213ENST00000622183 NDUFV2P19404 249 aa9.43□□□□□ -0.9
CPNE3-213ENST00000622183 FAM98CQ17RN3 349 aaKnown RBP9.43□□□□□ -0.9
CPNE3-213ENST00000622183 SWT1Q5T5J6 900 aaKnown RBP9.43□□□□□ -0.9
CPNE3-213ENST00000622183 DMRTA1Q5VZB9 504 aa9.43□□□□□ -0.9
CPNE3-213ENST00000622183 LHX8Q68G74 356 aa9.43□□□□□ -0.9
CPNE3-213ENST00000622183 SEPT9Q9UHD8 586 aaPredicted RBP9.43□□□□□ -0.9
CPNE3-213ENST00000622183 RAD21O60216 631 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 ST18O60284 1047 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 LILRB3O75022 631 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 SLC10A3P09131 477 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 QPCTQ16769 361 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 PROSER2Q86WR7 435 aaPredicted RBP9.42□□□□□ -0.9
CPNE3-213ENST00000622183 SNRKQ9NRH2 765 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 VPS9D1Q9Y2B5 631 aa9.42□□□□□ -0.9
CPNE3-213ENST00000622183 ARID3CA6NKF2 412 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 HOXA2O43364 376 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 EMP3P54852 163 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 CSPP1Q1MSJ5 1256 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 POM121Q96HA1 1249 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 AXIN2Q9Y2T1 843 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 PCDHB15Q9Y5E8 787 aa9.41□□□□□ -0.9
CPNE3-213ENST00000622183 SOCS7O14512 581 aa9.4□□□□□ -0.9
CPNE3-213ENST00000622183 HDGFP51858 240 aaKnown RBP9.4□□□□□ -0.9
CPNE3-213ENST00000622183 PRPF38BQ5VTL8 546 aaKnown RBP9.4□□□□□ -0.9
CPNE3-213ENST00000622183 FNBP4Q8N3X1 1017 aaPredicted RBP9.4□□□□□ -0.9
CPNE3-213ENST00000622183 SLC4A3P48751 1232 aa9.39□□□□□ -0.91
CPNE3-213ENST00000622183 LAPTM4BQ86VI4 370 aa9.39□□□□□ -0.91
CPNE3-213ENST00000622183 ZNF687Q8N1G0 1237 aa9.39□□□□□ -0.91
CPNE3-213ENST00000622183 COG6Q9Y2V7 657 aa9.39□□□□□ -0.91
CPNE3-213ENST00000622183 SLF2Q8IX21 1173 aa9.38□□□□□ -0.91
CPNE3-213ENST00000622183 MTMR14Q8NCE2 650 aa9.38□□□□□ -0.91
CPNE3-213ENST00000622183 MARVELD3Q96A59 401 aa9.38□□□□□ -0.91
CPNE3-213ENST00000622183 NBPF3Q9H094 633 aa9.38□□□□□ -0.91
CPNE3-213ENST00000622183 NUTM2BA6NNL0 878 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-213ENST00000622183 NUTM2EB1AL46 878 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-213ENST00000622183 FDX1P10109 184 aa9.37□□□□□ -0.91
CPNE3-213ENST00000622183 RTL5Q5HYW3 569 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-213ENST00000622183 NUTM2DQ5VT03 806 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-213ENST00000622183 NUTM2AQ8IVF1 878 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-213ENST00000622183 ZBTB3Q9H5J0 574 aa9.37□□□□□ -0.91
CPNE3-213ENST00000622183 HRCP23327 699 aa9.36□□□□□ -0.91
CPNE3-213ENST00000622183 CABLES1Q8TDN4 633 aa9.36□□□□□ -0.91
CPNE3-213ENST00000622183 PCDHGC3Q9UN70 934 aa9.36□□□□□ -0.91
CPNE3-213ENST00000622183 FAM205CA6NFA0 338 aa9.35□□□□□ -0.91
CPNE3-213ENST00000622183 TK2O00142 265 aa9.35□□□□□ -0.91
CPNE3-213ENST00000622183 AP1G2O75843 785 aa9.35□□□□□ -0.91
CPNE3-213ENST00000622183 SAMD7Q7Z3H4 446 aa9.35□□□□□ -0.91
CPNE3-213ENST00000622183 ARID3AQ99856 593 aa9.35□□□□□ -0.91
CPNE3-213ENST00000622183 BHMG1C9JSJ3 638 aaPredicted RBP9.34□□□□□ -0.91
CPNE3-213ENST00000622183 CFHP08603 1231 aa9.33□□□□□ -0.92
CPNE3-213ENST00000622183 USP17L8P0C7I0 530 aa9.33□□□□□ -0.92
CPNE3-213ENST00000622183 GRIPAP1Q4V328 841 aa9.33□□□□□ -0.92
CPNE3-213ENST00000622183 HLA-CQ95604 372 aa9.33□□□□□ -0.92
CPNE3-213ENST00000622183 GUCA2AQ02747 115 aa9.32□□□□□ -0.92
CPNE3-213ENST00000622183 FUT2Q10981 343 aa9.32□□□□□ -0.92
CPNE3-213ENST00000622183 CCDC82Q8N4S0 544 aa9.32□□□□□ -0.92
CPNE3-213ENST00000622183 ZFRQ96KR1 1074 aaKnown RBP9.32□□□□□ -0.92
CPNE3-213ENST00000622183 ZNF777Q9ULD5 760 aaPredicted RBP9.32□□□□□ -0.92
CPNE3-213ENST00000622183 GDPD2Q9HCC8 539 aa9.31□□□□□ -0.92
CPNE3-213ENST00000622183 PRM3Q9NNZ6 103 aa9.31□□□□□ -0.92
CPNE3-213ENST00000622183 MTMR2Q13614 643 aa9.3□□□□□ -0.92
CPNE3-213ENST00000622183 HS3ST6Q96QI5 342 aa9.3□□□□□ -0.92
CPNE3-213ENST00000622183 POTEB3A0JP26 581 aa9.29□□□□□ -0.92
CPNE3-213ENST00000622183 ATP6V1AP38606 617 aa9.29□□□□□ -0.92
CPNE3-213ENST00000622183 POTEBQ6S5H4 581 aa9.29□□□□□ -0.92
CPNE3-213ENST00000622183 MRPL50Q8N5N7 158 aaKnown RBP9.29□□□□□ -0.92
CPNE3-213ENST00000622183 NECTIN2Q92692 538 aa9.29□□□□□ -0.92
CPNE3-213ENST00000622183 RNF40O75150 1001 aa9.28□□□□□ -0.92
CPNE3-213ENST00000622183 LSM11P83369 360 aaKnown RBP eCLIP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms