RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 HAP1P54257 671 aaPredicted RBP11.68□□□□□ -0.54
GGA3-222ENST00000621217 ERCC6L2Q5T890 1561 aa11.68□□□□□ -0.54
GGA3-222ENST00000621217 NGDNQ8NEJ9 315 aaKnown RBP11.68□□□□□ -0.54
GGA3-222ENST00000621217 UPF2Q9HAU5 1272 aaKnown RBP11.68□□□□□ -0.54
GGA3-222ENST00000621217 ERBINQ96RT1 1412 aa11.68□□□□□ -0.54
GGA3-222ENST00000621217 RBM33Q96EV2 1170 aaKnown RBP11.68□□□□□ -0.54
GGA3-222ENST00000621217 MSH5O43196 834 aa11.68□□□□□ -0.54
GGA3-222ENST00000621217 TERF2IPQ9NYB0 399 aa11.68□□□□□ -0.54
GGA3-222ENST00000621217 ELL2O00472 640 aaPredicted RBP11.67□□□□□ -0.54
GGA3-222ENST00000621217 PLCH2O75038 1416 aa11.67□□□□□ -0.54
GGA3-222ENST00000621217 EVC2Q86UK5 1308 aa11.67□□□□□ -0.54
GGA3-222ENST00000621217 CFAP65Q6ZU64 1925 aaKnown RBP11.67□□□□□ -0.54
GGA3-222ENST00000621217 NUTM2GQ5VZR2 741 aa11.67□□□□□ -0.54
GGA3-222ENST00000621217 TCOF1Q13428 1488 aaKnown RBP11.66□□□□□ -0.54
GGA3-222ENST00000621217 SPRYD3Q8NCJ5 442 aa11.66□□□□□ -0.54
GGA3-222ENST00000621217 FANCIQ9NVI1 1328 aa11.65□□□□□ -0.54
GGA3-222ENST00000621217 PDE4AP27815 886 aa11.65□□□□□ -0.54
GGA3-222ENST00000621217 PPP2R1AP30153 589 aa11.65□□□□□ -0.54
GGA3-222ENST00000621217 PDE3BQ13370 1112 aa11.65□□□□□ -0.54
GGA3-222ENST00000621217 WAPLQ7Z5K2 1190 aa11.65□□□□□ -0.54
GGA3-222ENST00000621217 TRIM44Q96DX7 344 aaPredicted RBP11.64□□□□□ -0.55
GGA3-222ENST00000621217 BRD4O60885 1362 aaPredicted RBP11.64□□□□□ -0.55
GGA3-222ENST00000621217 COG6Q9Y2V7 657 aa11.64□□□□□ -0.55
GGA3-222ENST00000621217 TCERG1O14776 1098 aaKnown RBP11.64□□□□□ -0.55
GGA3-222ENST00000621217 IPO9Q96P70 1041 aaKnown RBP11.64□□□□□ -0.55
GGA3-222ENST00000621217 PZPP20742 1482 aa11.63□□□□□ -0.55
GGA3-222ENST00000621217 MTHFSP49914 203 aa11.63□□□□□ -0.55
GGA3-222ENST00000621217 PMFBP1Q8TBY8 1022 aa11.62□□□□□ -0.55
GGA3-222ENST00000621217 DISP3Q9P2K9 1392 aa11.62□□□□□ -0.55
GGA3-222ENST00000621217 HMOX1P09601 288 aa11.62□□□□□ -0.55
GGA3-222ENST00000621217 C20orf194Q5TEA3 1177 aa11.62□□□□□ -0.55
GGA3-222ENST00000621217 CGNL1Q0VF96 1302 aa11.62□□□□□ -0.55
GGA3-222ENST00000621217 WDR7Q9Y4E6 1490 aa11.61□□□□□ -0.55
GGA3-222ENST00000621217 HSP90AA1P07900 732 aaKnown RBP11.61□□□□□ -0.55
GGA3-222ENST00000621217 CABP1Q9NZU7 370 aa11.61□□□□□ -0.55
GGA3-222ENST00000621217 ABCC2Q92887 1545 aa11.6□□□□□ -0.55
GGA3-222ENST00000621217 DHX29Q7Z478 1369 aaKnown RBP11.6□□□□□ -0.55
GGA3-222ENST00000621217 BCAR3O75815 825 aa11.6□□□□□ -0.55
GGA3-222ENST00000621217 FBLN1P23142 703 aa11.6□□□□□ -0.55
GGA3-222ENST00000621217 PANK1Q8TE04 598 aa11.59□□□□□ -0.55
GGA3-222ENST00000621217 CHD1O14646 1710 aa11.59□□□□□ -0.55
GGA3-222ENST00000621217 SMG6Q86US8 1419 aaKnown RBP11.59□□□□□ -0.55
GGA3-222ENST00000621217 SLC52A1Q9NWF4 448 aa11.58□□□□□ -0.56
GGA3-222ENST00000621217 SLKQ9H2G2 1235 aaPredicted RBP11.58□□□□□ -0.56
GGA3-222ENST00000621217 APBB1O00213 710 aa11.58□□□□□ -0.56
GGA3-222ENST00000621217 TEX14Q8IWB6 1497 aa11.58□□□□□ -0.56
GGA3-222ENST00000621217 ANO8Q9HCE9 1232 aaPredicted RBP11.57□□□□□ -0.56
GGA3-222ENST00000621217 ITSN2Q9NZM3 1697 aa11.57□□□□□ -0.56
GGA3-222ENST00000621217 AMPHP49418 695 aa11.57□□□□□ -0.56
GGA3-222ENST00000621217 CDK19Q9BWU1 502 aa11.57□□□□□ -0.56
GGA3-222ENST00000621217 DENND4BO75064 1496 aaPredicted RBP11.57□□□□□ -0.56
GGA3-222ENST00000621217 NOS1P29475 1434 aa11.57□□□□□ -0.56
GGA3-222ENST00000621217 ITPRIPQ8IWB1 547 aa11.57□□□□□ -0.56
GGA3-222ENST00000621217 BECN1Q14457 450 aa11.57□□□□□ -0.56
GGA3-222ENST00000621217 SMC4Q9NTJ3 1288 aa11.56□□□□□ -0.56
GGA3-222ENST00000621217 DNMT1P26358 1616 aaKnown RBP11.56□□□□□ -0.56
GGA3-222ENST00000621217 FAM135AQ9P2D6 1515 aa11.56□□□□□ -0.56
GGA3-222ENST00000621217 KDM5BQ9UGL1 1544 aa11.56□□□□□ -0.56
GGA3-222ENST00000621217 COG3Q96JB2 828 aa11.56□□□□□ -0.56
GGA3-222ENST00000621217 TCP11L2Q8N4U5 519 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 TESK2Q96S53 571 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.53□□□□□ -0.56
GGA3-222ENST00000621217 E9PSI1 815 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 XPCQ01831 940 aaPredicted RBP11.53□□□□□ -0.56
GGA3-222ENST00000621217 LRRIQ1Q96JM4 1722 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 ABCA8O94911 1581 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 ABCC10Q5T3U5 1492 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 RTF1Q92541 710 aaKnown RBP11.53□□□□□ -0.56
GGA3-222ENST00000621217 STAC3Q96MF2 364 aa11.53□□□□□ -0.56
GGA3-222ENST00000621217 MBD5Q9P267 1494 aa11.52□□□□□ -0.57
GGA3-222ENST00000621217 DIAPH1O60610 1272 aaKnown RBP11.52□□□□□ -0.57
GGA3-222ENST00000621217 A2MP01023 1474 aa11.52□□□□□ -0.57
GGA3-222ENST00000621217 CSB-PGBD3P0DP91 1061 aa11.52□□□□□ -0.57
GGA3-222ENST00000621217 RRS1Q15050 365 aaKnown RBP11.52□□□□□ -0.57
GGA3-222ENST00000621217 NECTIN2Q92692 538 aa11.52□□□□□ -0.57
GGA3-222ENST00000621217 RIPK4P57078 832 aa11.51□□□□□ -0.57
GGA3-222ENST00000621217 TSR2Q969E8 191 aaKnown RBP11.51□□□□□ -0.57
GGA3-222ENST00000621217 MYH16Q9H6N6 1097 aa11.51□□□□□ -0.57
GGA3-222ENST00000621217 NCLP19338 710 aaKnown RBP11.5□□□□□ -0.57
GGA3-222ENST00000621217 CENPQQ7L2Z9 268 aaPredicted RBP11.5□□□□□ -0.57
GGA3-222ENST00000621217 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.5□□□□□ -0.57
GGA3-222ENST00000621217 RSPH6AQ9H0K4 717 aa11.5□□□□□ -0.57
GGA3-222ENST00000621217 GCC2Q8IWJ2 1684 aa11.5□□□□□ -0.57
GGA3-222ENST00000621217 RALGAPBQ86X10 1494 aa11.5□□□□□ -0.57
GGA3-222ENST00000621217 SPATA31E1Q6ZUB1 1445 aa11.5□□□□□ -0.57
GGA3-222ENST00000621217 PRAG1Q86YV5 1406 aa11.5□□□□□ -0.57
GGA3-222ENST00000621217 PER1O15534 1290 aaPredicted RBP11.49□□□□□ -0.57
GGA3-222ENST00000621217 NLRP6P59044 892 aa11.49□□□□□ -0.57
GGA3-222ENST00000621217 L1TD1Q5T7N2 865 aaKnown RBP11.49□□□□□ -0.57
GGA3-222ENST00000621217 TTC37Q6PGP7 1564 aa11.49□□□□□ -0.57
GGA3-222ENST00000621217 DUOX2Q9NRD8 1548 aa11.49□□□□□ -0.57
GGA3-222ENST00000621217 MFAP1P55081 439 aaKnown RBP11.49□□□□□ -0.57
GGA3-222ENST00000621217 NCKAP5LQ9HCH0 1330 aa11.49□□□□□ -0.57
GGA3-222ENST00000621217 PSME1Q06323 249 aa11.49□□□□□ -0.57
GGA3-222ENST00000621217 VSIG10Q8N0Z9 540 aa11.49□□□□□ -0.57
GGA3-222ENST00000621217 PNNQ9H307 717 aaKnown RBP11.49□□□□□ -0.57
GGA3-222ENST00000621217 TPRNQ4KMQ1 711 aa11.48□□□□□ -0.57
GGA3-222ENST00000621217 SLC4A10Q6U841 1118 aa11.48□□□□□ -0.57
GGA3-222ENST00000621217 NSD3Q9BZ95 1437 aa11.48□□□□□ -0.57
GGA3-222ENST00000621217 ZNF518AQ6AHZ1 1483 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms