RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 FGD6Q6ZV73 1430 aa12.21□□□□□ -0.46
CLK1-215ENST00000621181 LMTK2Q8IWU2 1503 aa12.2□□□□□ -0.46
CLK1-215ENST00000621181 ROBO1Q9Y6N7 1651 aa12.19□□□□□ -0.46
CLK1-215ENST00000621181 SLC52A1Q9NWF4 448 aa12.18□□□□□ -0.46
CLK1-215ENST00000621181 MSH6P52701 1360 aa12.18□□□□□ -0.46
CLK1-215ENST00000621181 ADGRB3O60242 1522 aa12.18□□□□□ -0.46
CLK1-215ENST00000621181 TET3O43151 1660 aa12.18□□□□□ -0.46
CLK1-215ENST00000621181 NOS1P29475 1434 aa12.18□□□□□ -0.46
CLK1-215ENST00000621181 NKTRP30414 1462 aaKnown RBP12.17□□□□□ -0.46
CLK1-215ENST00000621181 PPP1R15AO75807 674 aaPredicted RBP12.16□□□□□ -0.46
CLK1-215ENST00000621181 POTEAQ6S8J7 498 aa12.16□□□□□ -0.46
CLK1-215ENST00000621181 NCBP3Q53F19 620 aaKnown RBP12.15□□□□□ -0.46
CLK1-215ENST00000621181 SLAIN2Q9P270 581 aa12.15□□□□□ -0.46
CLK1-215ENST00000621181 NWD1Q149M9 1564 aa12.15□□□□□ -0.46
CLK1-215ENST00000621181 FAM50AQ14320 339 aaKnown RBP12.14□□□□□ -0.47
CLK1-215ENST00000621181 RPRD2Q5VT52 1461 aaKnown RBP12.14□□□□□ -0.47
CLK1-215ENST00000621181 HDGFP51858 240 aaKnown RBP12.14□□□□□ -0.47
CLK1-215ENST00000621181 ANKRD50Q9ULJ7 1429 aa12.13□□□□□ -0.47
CLK1-215ENST00000621181 ADGRL2O95490 1459 aa12.13□□□□□ -0.47
CLK1-215ENST00000621181 C14orf37Q86TY3 774 aa12.12□□□□□ -0.47
CLK1-215ENST00000621181 PLEKHG1Q9ULL1 1385 aa12.12□□□□□ -0.47
CLK1-215ENST00000621181 PHLPP1O60346 1717 aa12.12□□□□□ -0.47
CLK1-215ENST00000621181 ZFYVE9O95405 1425 aa12.11□□□□□ -0.47
CLK1-215ENST00000621181 JCADQ9P266 1359 aa12.11□□□□□ -0.47
CLK1-215ENST00000621181 RIMS2Q9UQ26 1411 aa12.11□□□□□ -0.47
CLK1-215ENST00000621181 MYO5BQ9ULV0 1848 aa12.11□□□□□ -0.47
CLK1-215ENST00000621181 CHGAP10645 457 aaKnown RBP12.11□□□□□ -0.47
CLK1-215ENST00000621181 GCC2Q8IWJ2 1684 aa12.1□□□□□ -0.47
CLK1-215ENST00000621181 NPM3O75607 178 aaKnown RBP12.1□□□□□ -0.47
CLK1-215ENST00000621181 CHD2O14647 1828 aaKnown RBP12.09□□□□□ -0.47
CLK1-215ENST00000621181 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLK1-215ENST00000621181 TMEM131LA2VDJ0 1609 aa12.08□□□□□ -0.48
CLK1-215ENST00000621181 TBX22Q9Y458 520 aa12.08□□□□□ -0.48
CLK1-215ENST00000621181 MEX3CQ5U5Q3 659 aaKnown RBP12.07□□□□□ -0.48
CLK1-215ENST00000621181 NUTM2DQ5VT03 806 aaPredicted RBP12.07□□□□□ -0.48
CLK1-215ENST00000621181 CADPS2Q86UW7 1296 aa12.07□□□□□ -0.48
CLK1-215ENST00000621181 NCOA3Q9Y6Q9 1424 aa12.07□□□□□ -0.48
CLK1-215ENST00000621181 ATF3P18847 181 aa12.07□□□□□ -0.48
CLK1-215ENST00000621181 SETD1AO15047 1707 aaKnown RBP12.06□□□□□ -0.48
CLK1-215ENST00000621181 COL16A1Q07092 1604 aaPredicted RBP12.06□□□□□ -0.48
CLK1-215ENST00000621181 SPATA31A6Q5VVP1 1343 aa12.05□□□□□ -0.48
CLK1-215ENST00000621181 C19orf44Q9H6X5 657 aa12.05□□□□□ -0.48
CLK1-215ENST00000621181 DIP2AQ14689 1571 aa12.04□□□□□ -0.48
CLK1-215ENST00000621181 ADAMTS13Q76LX8 1427 aa12.04□□□□□ -0.48
CLK1-215ENST00000621181 ZNF772Q68DY9 489 aaPredicted RBP12.04□□□□□ -0.48
CLK1-215ENST00000621181 UNC13BO14795 1591 aa12.04□□□□□ -0.48
CLK1-215ENST00000621181 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.03□□□□□ -0.48
CLK1-215ENST00000621181 PIK3R4Q99570 1358 aa12.03□□□□□ -0.48
CLK1-215ENST00000621181 E9PCH4 1651 aa12.03□□□□□ -0.48
CLK1-215ENST00000621181 LRP6O75581 1613 aa12.03□□□□□ -0.48
CLK1-215ENST00000621181 AMOTL2Q9Y2J4 779 aa12.02□□□□□ -0.49
CLK1-215ENST00000621181 AHDC1Q5TGY3 1603 aaPredicted RBP12.02□□□□□ -0.49
CLK1-215ENST00000621181 TRIM52Q96A61 297 aa12.01□□□□□ -0.49
CLK1-215ENST00000621181 TRPM2O94759 1503 aa12.01□□□□□ -0.49
CLK1-215ENST00000621181 NUP155O75694 1391 aa12□□□□□ -0.49
CLK1-215ENST00000621181 IQGAP3Q86VI3 1631 aa12□□□□□ -0.49
CLK1-215ENST00000621181 ROCK1Q13464 1354 aa12□□□□□ -0.49
CLK1-215ENST00000621181 SHPRHQ149N8 1683 aa12□□□□□ -0.49
CLK1-215ENST00000621181 NUTM2BA6NNL0 878 aaPredicted RBP12□□□□□ -0.49
CLK1-215ENST00000621181 NUTM2EB1AL46 878 aaPredicted RBP12□□□□□ -0.49
CLK1-215ENST00000621181 BRINP3Q76B58 766 aa12□□□□□ -0.49
CLK1-215ENST00000621181 NUTM2AQ8IVF1 878 aaPredicted RBP12□□□□□ -0.49
CLK1-215ENST00000621181 RNF216Q9NWF9 866 aaPredicted RBP11.99□□□□□ -0.49
CLK1-215ENST00000621181 ITGAEP38570 1179 aa11.98□□□□□ -0.49
CLK1-215ENST00000621181 DCCP43146 1447 aa11.98□□□□□ -0.49
CLK1-215ENST00000621181 PTPRUQ92729 1446 aa11.98□□□□□ -0.49
CLK1-215ENST00000621181 RXRBP28702 533 aa11.97□□□□□ -0.49
CLK1-215ENST00000621181 UPF1Q92900 1129 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLK1-215ENST00000621181 HOXD11P31277 338 aaPredicted RBP11.97□□□□□ -0.49
CLK1-215ENST00000621181 ZNF326Q5BKZ1 582 aaKnown RBP11.97□□□□□ -0.49
CLK1-215ENST00000621181 ASXL1Q8IXJ9 1541 aa11.96□□□□□ -0.5
CLK1-215ENST00000621181 SRCAPQ6ZRS2 3230 aa11.94□□□□□ -0.5
CLK1-215ENST00000621181 LRRC59Q96AG4 307 aaKnown RBP11.94□□□□□ -0.5
CLK1-215ENST00000621181 AFF2P51816 1311 aa11.94□□□□□ -0.5
CLK1-215ENST00000621181 SETBP1Q9Y6X0 1596 aa11.94□□□□□ -0.5
CLK1-215ENST00000621181 XRN1Q8IZH2 1706 aaKnown RBP11.94□□□□□ -0.5
CLK1-215ENST00000621181 NRXN3Q9Y4C0 1643 aa11.93□□□□□ -0.5
CLK1-215ENST00000621181 MST1RQ04912 1400 aa11.93□□□□□ -0.5
CLK1-215ENST00000621181 SETD5Q9C0A6 1442 aa11.93□□□□□ -0.5
CLK1-215ENST00000621181 METP08581 1390 aa11.93□□□□□ -0.5
CLK1-215ENST00000621181 SPHKAPQ2M3C7 1700 aa11.93□□□□□ -0.5
CLK1-215ENST00000621181 C8orf37Q96NL8 207 aa11.93□□□□□ -0.5
CLK1-215ENST00000621181 CDK12Q9NYV4 1490 aaPredicted RBP11.92□□□□□ -0.5
CLK1-215ENST00000621181 DDX17Q92841 729 aaKnown RBP11.91□□□□□ -0.5
CLK1-215ENST00000621181 ADGRL3Q9HAR2 1447 aa11.91□□□□□ -0.5
CLK1-215ENST00000621181 NHSL1Q5SYE7 1610 aa11.91□□□□□ -0.5
CLK1-215ENST00000621181 QTRT2Q9H974 415 aaKnown RBP11.89□□□□□ -0.51
CLK1-215ENST00000621181 PNPLA6Q8IY17 1366 aa11.89□□□□□ -0.51
CLK1-215ENST00000621181 PPARGC1BQ86YN6 1023 aaKnown RBP11.88□□□□□ -0.51
CLK1-215ENST00000621181 ADAMTS2O95450 1211 aa11.88□□□□□ -0.51
CLK1-215ENST00000621181 RBM6P78332 1123 aaKnown RBP11.88□□□□□ -0.51
CLK1-215ENST00000621181 NALCNQ8IZF0 1738 aa11.88□□□□□ -0.51
CLK1-215ENST00000621181 NGLY1Q96IV0 654 aa11.88□□□□□ -0.51
CLK1-215ENST00000621181 NEXMIFQ5QGS0 1516 aa11.87□□□□□ -0.51
CLK1-215ENST00000621181 CLTCL1P53675 1640 aa11.87□□□□□ -0.51
CLK1-215ENST00000621181 RGS12O14924 1447 aa11.86□□□□□ -0.51
CLK1-215ENST00000621181 C1orf167Q5SNV9 1468 aa11.86□□□□□ -0.51
CLK1-215ENST00000621181 DCAF8L1A6NGE4 600 aa11.86□□□□□ -0.51
CLK1-215ENST00000621181 KIF1BO60333 1816 aa11.85□□□□□ -0.51
CLK1-215ENST00000621181 VGFO15240 615 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms