RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	ADGRF5	Q8IZF2	1346 aa		33.24	■■■□□ 2.91
CCND3-223	ENST00000616010	NRXN1	Q9ULB1	1477 aa		33.24	■■■□□ 2.91
CCND3-223	ENST00000616010	KDM5A	P29375	1690 aa	Known RBP	33.24	■■■□□ 2.91
CCND3-223	ENST00000616010	UBR1	Q8IWV7	1749 aa		33.23	■■■□□ 2.91
CCND3-223	ENST00000616010	ROCK2	O75116	1388 aa	Known RBP	33.23	■■■□□ 2.91
CCND3-223	ENST00000616010	MYO3A	Q8NEV4	1616 aa		33.23	■■■□□ 2.91
CCND3-223	ENST00000616010	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.18	■■■□□ 2.9
CCND3-223	ENST00000616010	KIAA1210	Q9ULL0	1709 aa		33.17	■■■□□ 2.9
CCND3-223	ENST00000616010	PIK3C2G	O75747	1445 aa		33.17	■■■□□ 2.9
CCND3-223	ENST00000616010	CARD11	Q9BXL7	1154 aa		33.16	■■■□□ 2.9
CCND3-223	ENST00000616010	PTPRM	P28827	1452 aa		33.16	■■■□□ 2.9
CCND3-223	ENST00000616010	EIF4G2	P78344	907 aa	Known RBP eCLIP	33.16	■■■□□ 2.9
CCND3-223	ENST00000616010	HIRIP3	Q9BW71	556 aa	Predicted RBP	33.16	■■■□□ 2.9
CCND3-223	ENST00000616010	NBPF1	Q3BBV0	1214 aa		33.15	■■■□□ 2.9
CCND3-223	ENST00000616010	VGF	O15240	615 aa	Predicted RBP	33.14	■■■□□ 2.9
CCND3-223	ENST00000616010	LAMC1	P11047	1609 aa		33.14	■■■□□ 2.9
CCND3-223	ENST00000616010	GPRASP1	Q5JY77	1395 aa		33.14	■■■□□ 2.9
CCND3-223	ENST00000616010	ZFYVE9	O95405	1425 aa		33.14	■■■□□ 2.9
CCND3-223	ENST00000616010	RIMS2	Q9UQ26	1411 aa		33.13	■■■□□ 2.89
CCND3-223	ENST00000616010	HSPA5	P11021	654 aa	Known RBP	33.12	■■■□□ 2.89
CCND3-223	ENST00000616010	USP47	Q96K76	1375 aa		33.12	■■■□□ 2.89
CCND3-223	ENST00000616010	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.09	■■■□□ 2.89
CCND3-223	ENST00000616010	CFAP70	Q5T0N1	1121 aa		33.07	■■■□□ 2.89
CCND3-223	ENST00000616010	TMEM2	Q9UHN6	1383 aa		33.06	■■■□□ 2.88
CCND3-223	ENST00000616010	ZNF142	P52746	1687 aa	Predicted RBP	33.05	■■■□□ 2.88
CCND3-223	ENST00000616010	SETD1B	Q9UPS6	1966 aa	Known RBP	33.03	■■■□□ 2.88
CCND3-223	ENST00000616010	SETBP1	Q9Y6X0	1596 aa		33.01	■■■□□ 2.88
CCND3-223	ENST00000616010	IQGAP1	P46940	1657 aa		33.01	■■■□□ 2.88
CCND3-223	ENST00000616010	SENP3	Q9H4L4	574 aa	Predicted RBP	33.01	■■■□□ 2.87
CCND3-223	ENST00000616010	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33	■■■□□ 2.87
CCND3-223	ENST00000616010	C14orf93	Q9H972	538 aa	Known RBP	33	■■■□□ 2.87
CCND3-223	ENST00000616010	SLIT1	O75093	1534 aa		32.99	■■■□□ 2.87
CCND3-223	ENST00000616010	ADGRB1	O14514	1584 aa		32.97	■■■□□ 2.87
CCND3-223	ENST00000616010	ARHGAP23	Q9P227	1491 aa		32.96	■■■□□ 2.87
CCND3-223	ENST00000616010	HDGF	P51858	240 aa	Known RBP	32.95	■■■□□ 2.87
CCND3-223	ENST00000616010	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.95	■■■□□ 2.87
CCND3-223	ENST00000616010	SCAF11	Q99590	1463 aa	Known RBP	32.95	■■■□□ 2.87
CCND3-223	ENST00000616010	KDM4F	A0A1W2PPD8	638 aa		32.94	■■■□□ 2.86
CCND3-223	ENST00000616010	ALK	Q9UM73	1620 aa		32.93	■■■□□ 2.86
CCND3-223	ENST00000616010	NRXN3	Q9Y4C0	1643 aa		32.93	■■■□□ 2.86
CCND3-223	ENST00000616010	ST20-MTHFS	A0A0A6YYL1	179 aa		32.91	■■■□□ 2.86
CCND3-223	ENST00000616010	ASXL1	Q8IXJ9	1541 aa		32.91	■■■□□ 2.86
CCND3-223	ENST00000616010	LTK	P29376	864 aa		32.89	■■■□□ 2.85
CCND3-223	ENST00000616010	TMEM132E	Q6IEE7	984 aa		32.89	■■■□□ 2.85
CCND3-223	ENST00000616010	SETD1A	O15047	1707 aa	Known RBP	32.88	■■■□□ 2.85
CCND3-223	ENST00000616010	TXNDC2	Q86VQ3	553 aa		32.87	■■■□□ 2.85
CCND3-223	ENST00000616010	EID1	Q9Y6B2	187 aa		32.87	■■■□□ 2.85
CCND3-223	ENST00000616010	EIF3A	Q14152	1382 aa	Known RBP	32.86	■■■□□ 2.85
CCND3-223	ENST00000616010	POLR1A	O95602	1720 aa	Predicted RBP	32.86	■■■□□ 2.85
CCND3-223	ENST00000616010	PLEKHG1	Q9ULL1	1385 aa		32.84	■■■□□ 2.85
CCND3-223	ENST00000616010	BCAN	Q96GW7	911 aa		32.81	■■■□□ 2.84
CCND3-223	ENST00000616010	WASHC2A	Q641Q2	1341 aa		32.8	■■■□□ 2.84
CCND3-223	ENST00000616010	C11orf95	C9JLR9	678 aa	Predicted RBP	32.8	■■■□□ 2.84
CCND3-223	ENST00000616010	DIEXF	Q68CQ4	756 aa	Known RBP	32.8	■■■□□ 2.84
CCND3-223	ENST00000616010	TRAK1	Q9UPV9	953 aa		32.78	■■■□□ 2.84
CCND3-223	ENST00000616010	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.78	■■■□□ 2.84
CCND3-223	ENST00000616010	ADAMTS13	Q76LX8	1427 aa		32.76	■■■□□ 2.84
CCND3-223	ENST00000616010	CCDC7	Q96M83	1385 aa		32.76	■■■□□ 2.83
CCND3-223	ENST00000616010	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.76	■■■□□ 2.83
CCND3-223	ENST00000616010	TESK2	Q96S53	571 aa		32.75	■■■□□ 2.83
CCND3-223	ENST00000616010	KIF7	Q2M1P5	1343 aa		32.74	■■■□□ 2.83
CCND3-223	ENST00000616010	MET	P08581	1390 aa		32.72	■■■□□ 2.83
CCND3-223	ENST00000616010	STK26	Q9P289	416 aa		32.72	■■■□□ 2.83
CCND3-223	ENST00000616010	ANKLE2	Q86XL3	938 aa		32.71	■■■□□ 2.83
CCND3-223	ENST00000616010	QRICH2	Q9H0J4	1663 aa		32.71	■■■□□ 2.83
CCND3-223	ENST00000616010	DDX10	Q13206	875 aa	Known RBP	32.7	■■■□□ 2.82
CCND3-223	ENST00000616010	MED14	O60244	1454 aa		32.69	■■■□□ 2.82
CCND3-223	ENST00000616010	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.69	■■■□□ 2.82
CCND3-223	ENST00000616010	DIP2A	Q14689	1571 aa		32.68	■■■□□ 2.82
CCND3-223	ENST00000616010	DISP3	Q9P2K9	1392 aa		32.67	■■■□□ 2.82
CCND3-223	ENST00000616010	LRPPRC	P42704	1394 aa	Known RBP	32.67	■■■□□ 2.82
CCND3-223	ENST00000616010	SLC26A8	Q96RN1	970 aa		32.67	■■■□□ 2.82
CCND3-223	ENST00000616010	POLR3GL	Q9BT43	218 aa		32.65	■■■□□ 2.82
CCND3-223	ENST00000616010	TMF1	P82094	1093 aa		32.64	■■■□□ 2.82
CCND3-223	ENST00000616010	KNDC1	Q76NI1	1749 aa		32.64	■■■□□ 2.82
CCND3-223	ENST00000616010	SBNO2	Q9Y2G9	1366 aa		32.62	■■■□□ 2.81
CCND3-223	ENST00000616010	DLC1	Q96QB1	1528 aa		32.62	■■■□□ 2.81
CCND3-223	ENST00000616010	ABCC11	Q96J66	1382 aa		32.6	■■■□□ 2.81
CCND3-223	ENST00000616010	LMTK3	Q96Q04	1460 aa		32.6	■■■□□ 2.81
CCND3-223	ENST00000616010	TBX22	Q9Y458	520 aa		32.59	■■■□□ 2.81
CCND3-223	ENST00000616010	PRAM1	Q96QH2	718 aa		32.57	■■■□□ 2.8
CCND3-223	ENST00000616010	CPS1	P31327	1500 aa		32.57	■■■□□ 2.8
CCND3-223	ENST00000616010	TECPR2	O15040	1411 aa		32.57	■■■□□ 2.8
CCND3-223	ENST00000616010	NPHP4	O75161	1426 aa	Predicted RBP	32.57	■■■□□ 2.8
CCND3-223	ENST00000616010	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.56	■■■□□ 2.8
CCND3-223	ENST00000616010	NCKAP5L	Q9HCH0	1330 aa		32.55	■■■□□ 2.8
CCND3-223	ENST00000616010	PTPRU	Q92729	1446 aa		32.54	■■■□□ 2.8
CCND3-223	ENST00000616010	POGK	Q9P215	609 aa		32.54	■■■□□ 2.8
CCND3-223	ENST00000616010	SLC24A1	O60721	1099 aa		32.53	■■■□□ 2.8
CCND3-223	ENST00000616010	HSPA2	P54652	639 aa		32.53	■■■□□ 2.8
CCND3-223	ENST00000616010	PLEKHH1	Q9ULM0	1364 aa		32.5	■■■□□ 2.79
CCND3-223	ENST00000616010	CDCA8	Q53HL2	280 aa		32.49	■■■□□ 2.79
CCND3-223	ENST00000616010	TULP4	Q9NRJ4	1543 aa		32.48	■■■□□ 2.79
CCND3-223	ENST00000616010	XRN1	Q8IZH2	1706 aa	Known RBP	32.48	■■■□□ 2.79
CCND3-223	ENST00000616010	FAM135B	Q49AJ0	1406 aa		32.48	■■■□□ 2.79
CCND3-223	ENST00000616010	WAPL	Q7Z5K2	1190 aa		32.48	■■■□□ 2.79
CCND3-223	ENST00000616010	PIK3R4	Q99570	1358 aa		32.47	■■■□□ 2.79
CCND3-223	ENST00000616010	ROBO2	Q9HCK4	1378 aa		32.47	■■■□□ 2.79
CCND3-223	ENST00000616010	AMOTL2	Q9Y2J4	779 aa		32.45	■■■□□ 2.79
CCND3-223	ENST00000616010	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.45	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms