RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 TMEM132EQ6IEE7 984 aa15.97■□□□□ 0.15
MSH6-213ENST00000614496 MYH16Q9H6N6 1097 aa15.97■□□□□ 0.15
MSH6-213ENST00000614496 TESK2Q96S53 571 aa15.96■□□□□ 0.15
MSH6-213ENST00000614496 KIAA0556O60303 1618 aa15.96■□□□□ 0.15
MSH6-213ENST00000614496 KIF21AQ7Z4S6 1674 aa15.96■□□□□ 0.14
MSH6-213ENST00000614496 CCDC141Q6ZP82 1450 aa15.96■□□□□ 0.14
MSH6-213ENST00000614496 TCP11L2Q8N4U5 519 aa15.94■□□□□ 0.14
MSH6-213ENST00000614496 HSCBQ8IWL3 235 aa15.94■□□□□ 0.14
MSH6-213ENST00000614496 HSP90AB1P08238 724 aaKnown RBP15.94■□□□□ 0.14
MSH6-213ENST00000614496 SLC12A5Q9H2X9 1139 aa15.94■□□□□ 0.14
MSH6-213ENST00000614496 PLEKHH2Q8IVE3 1493 aa15.93■□□□□ 0.14
MSH6-213ENST00000614496 ATP10BO94823 1461 aa15.93■□□□□ 0.14
MSH6-213ENST00000614496 PRAG1Q86YV5 1406 aa15.92■□□□□ 0.14
MSH6-213ENST00000614496 MTHFSP49914 203 aa15.92■□□□□ 0.14
MSH6-213ENST00000614496 NAP1L5Q96NT1 182 aaPredicted RBP15.92■□□□□ 0.14
MSH6-213ENST00000614496 KIF14Q15058 1648 aa15.92■□□□□ 0.14
MSH6-213ENST00000614496 ANP32BQ92688 251 aaKnown RBP15.92■□□□□ 0.14
MSH6-213ENST00000614496 FOXD4L1Q9NU39 408 aa15.91■□□□□ 0.14
MSH6-213ENST00000614496 NCLP19338 710 aaKnown RBP15.91■□□□□ 0.14
MSH6-213ENST00000614496 LRRIQ1Q96JM4 1722 aa15.91■□□□□ 0.14
MSH6-213ENST00000614496 RUNDC1Q96C34 613 aa15.91■□□□□ 0.14
MSH6-213ENST00000614496 TRIM44Q96DX7 344 aaPredicted RBP15.9■□□□□ 0.14
MSH6-213ENST00000614496 L1TD1Q5T7N2 865 aaKnown RBP15.9■□□□□ 0.14
MSH6-213ENST00000614496 PLEKHH1Q9ULM0 1364 aa15.89■□□□□ 0.14
MSH6-213ENST00000614496 UHRF1BP1Q6BDS2 1440 aa15.89■□□□□ 0.13
MSH6-213ENST00000614496 ZKSCAN2Q63HK3 967 aa15.89■□□□□ 0.13
MSH6-213ENST00000614496 ELL2O00472 640 aaPredicted RBP15.88■□□□□ 0.13
MSH6-213ENST00000614496 IGHDP01880 384 aa15.88■□□□□ 0.13
MSH6-213ENST00000614496 PDZRN3Q9UPQ7 1066 aa15.88■□□□□ 0.13
MSH6-213ENST00000614496 PLPPR3Q6T4P5 718 aa15.88■□□□□ 0.13
MSH6-213ENST00000614496 AMER1Q5JTC6 1135 aaPredicted RBP15.87■□□□□ 0.13
MSH6-213ENST00000614496 PBRM1Q86U86 1689 aa15.87■□□□□ 0.13
MSH6-213ENST00000614496 APBB1O00213 710 aa15.87■□□□□ 0.13
MSH6-213ENST00000614496 WWC1Q8IX03 1113 aa15.87■□□□□ 0.13
MSH6-213ENST00000614496 SPINK5Q9NQ38 1064 aaPredicted RBP15.87■□□□□ 0.13
MSH6-213ENST00000614496 ITSN2Q9NZM3 1697 aa15.87■□□□□ 0.13
MSH6-213ENST00000614496 BCORL1Q5H9F3 1711 aa15.86■□□□□ 0.13
MSH6-213ENST00000614496 TARBP1Q13395 1621 aaKnown RBP15.86■□□□□ 0.13
MSH6-213ENST00000614496 PDE3AQ14432 1141 aa15.86■□□□□ 0.13
MSH6-213ENST00000614496 DZIP1LQ8IYY4 767 aaKnown RBP15.86■□□□□ 0.13
MSH6-213ENST00000614496 TSR2Q969E8 191 aaKnown RBP15.86■□□□□ 0.13
MSH6-213ENST00000614496 FAM135AQ9P2D6 1515 aa15.86■□□□□ 0.13
MSH6-213ENST00000614496 GOLGA6L3A6NEY3 463 aa15.85■□□□□ 0.13
MSH6-213ENST00000614496 GGNBP2Q9H3C7 697 aa15.85■□□□□ 0.13
MSH6-213ENST00000614496 CABP2Q9NPB3 220 aa15.84■□□□□ 0.13
MSH6-213ENST00000614496 C8orf34Q49A92 452 aa15.84■□□□□ 0.13
MSH6-213ENST00000614496 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.84■□□□□ 0.13
MSH6-213ENST00000614496 IPO8O15397 1037 aaKnown RBP15.84■□□□□ 0.13
MSH6-213ENST00000614496 KDM5CP41229 1560 aa15.84■□□□□ 0.13
MSH6-213ENST00000614496 ADGRL2O95490 1459 aa15.84■□□□□ 0.13
MSH6-213ENST00000614496 ARHGEF12Q9NZN5 1544 aa15.83■□□□□ 0.12
MSH6-213ENST00000614496 MINK1Q8N4C8 1332 aaPredicted RBP15.82■□□□□ 0.12
MSH6-213ENST00000614496 SOX12O15370 315 aa15.82■□□□□ 0.12
MSH6-213ENST00000614496 GOLGA6L22H0YM25 854 aa15.82■□□□□ 0.12
MSH6-213ENST00000614496 TPRNQ4KMQ1 711 aa15.82■□□□□ 0.12
MSH6-213ENST00000614496 NGEFQ8N5V2 710 aa15.82■□□□□ 0.12
MSH6-213ENST00000614496 ADGRF5Q8IZF2 1346 aa15.82■□□□□ 0.12
MSH6-213ENST00000614496 LNPKQ9C0E8 428 aa15.81■□□□□ 0.12
MSH6-213ENST00000614496 STAC3Q96MF2 364 aa15.81■□□□□ 0.12
MSH6-213ENST00000614496 EXOSC9Q06265 439 aaKnown RBP15.8■□□□□ 0.12
MSH6-213ENST00000614496 ESF1Q9H501 851 aaKnown RBP15.8■□□□□ 0.12
MSH6-213ENST00000614496 A2MP01023 1474 aa15.8■□□□□ 0.12
MSH6-213ENST00000614496 EVC2Q86UK5 1308 aa15.8■□□□□ 0.12
MSH6-213ENST00000614496 RIPK4P57078 832 aa15.8■□□□□ 0.12
MSH6-213ENST00000614496 HDGFL2Q7Z4V5 671 aaPredicted RBP15.8■□□□□ 0.12
MSH6-213ENST00000614496 C22orf23Q9BZE7 217 aa15.8■□□□□ 0.12
MSH6-213ENST00000614496 TNNQ9UQP3 1299 aa15.8■□□□□ 0.12
MSH6-213ENST00000614496 SCAPERQ9BY12 1400 aa15.8■□□□□ 0.12
MSH6-213ENST00000614496 DMRT2Q9Y5R5 561 aa15.79■□□□□ 0.12
MSH6-213ENST00000614496 NKTRP30414 1462 aaKnown RBP15.79■□□□□ 0.12
MSH6-213ENST00000614496 SYCP2Q9BX26 1530 aa15.79■□□□□ 0.12
MSH6-213ENST00000614496 ANKRD45Q5TZF3 282 aa15.79■□□□□ 0.12
MSH6-213ENST00000614496 MBD5Q9P267 1494 aa15.79■□□□□ 0.12
MSH6-213ENST00000614496 COL17A1Q9UMD9 1497 aaPredicted RBP15.78■□□□□ 0.12
MSH6-213ENST00000614496 RARSP54136 660 aaKnown RBP15.78■□□□□ 0.12
MSH6-213ENST00000614496 PNNQ9H307 717 aaKnown RBP15.78■□□□□ 0.12
MSH6-213ENST00000614496 TERF2IPQ9NYB0 399 aa15.77■□□□□ 0.12
MSH6-213ENST00000614496 SEC24BO95487 1268 aa15.77■□□□□ 0.12
MSH6-213ENST00000614496 MLECQ14165 292 aa15.77■□□□□ 0.11
MSH6-213ENST00000614496 DDX19BQ9UMR2 479 aa15.76■□□□□ 0.11
MSH6-213ENST00000614496 NSD3Q9BZ95 1437 aa15.76■□□□□ 0.11
MSH6-213ENST00000614496 KDM2BQ8NHM5 1336 aa15.75■□□□□ 0.11
MSH6-213ENST00000614496 PLEKHG5O94827 1062 aa15.74■□□□□ 0.11
MSH6-213ENST00000614496 CARD14Q9BXL6 1004 aa15.74■□□□□ 0.11
MSH6-213ENST00000614496 SHANK2Q9UPX8 1470 aa15.74■□□□□ 0.11
MSH6-213ENST00000614496 PCDHB15Q9Y5E8 787 aa15.74■□□□□ 0.11
MSH6-213ENST00000614496 SCAF11Q99590 1463 aaKnown RBP15.74■□□□□ 0.11
MSH6-213ENST00000614496 VGFO15240 615 aaPredicted RBP15.74■□□□□ 0.11
MSH6-213ENST00000614496 CHMP5Q9NZZ3 219 aa15.74■□□□□ 0.11
MSH6-213ENST00000614496 EIF4G3O43432 1585 aaKnown RBP15.74■□□□□ 0.11
MSH6-213ENST00000614496 HMOX1P09601 288 aa15.73■□□□□ 0.11
MSH6-213ENST00000614496 GBP4Q96PP9 640 aa15.73■□□□□ 0.11
MSH6-213ENST00000614496 DIAPH1O60610 1272 aaKnown RBP15.72■□□□□ 0.11
MSH6-213ENST00000614496 MVPQ14764 893 aaKnown RBP15.72■□□□□ 0.11
MSH6-213ENST00000614496 NOB1Q9ULX3 412 aaKnown RBP15.72■□□□□ 0.11
MSH6-213ENST00000614496 ADGBQ8N7X0 1667 aa15.72■□□□□ 0.11
MSH6-213ENST00000614496 C1orf115Q9H7X2 142 aa15.72■□□□□ 0.11
MSH6-213ENST00000614496 CHMP4BQ9H444 224 aaKnown RBP15.72■□□□□ 0.11
MSH6-213ENST00000614496 GLIPR1L2Q4G1C9 344 aa15.71■□□□□ 0.11
MSH6-213ENST00000614496 WDR63Q8IWG1 891 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms